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踢福井:一种基于福井函数引导的分子结构预测方法。

Kick-Fukui: A Fukui Function-Guided Method for Molecular Structure Prediction.

作者信息

Yañez Osvaldo, Báez-Grez Rodrigo, Inostroza Diego, Pino-Rios Ricardo, Rabanal-León Walter A, Contreras-García Julia, Cardenas Carlos, Tiznado William

机构信息

Center of New Drugs for Hypertension (CENDHY), 8380494 Santiago, Chile.

Department of Pharmaceutical Science and Technology, School of Chemical and Pharmaceutical Sciences, Universidad de Chile, 8380494 Santiago, Chile.

出版信息

J Chem Inf Model. 2021 Aug 23;61(8):3955-3963. doi: 10.1021/acs.jcim.1c00605. Epub 2021 Aug 11.

Abstract

Here, we introduce a hybrid method, named Kick-Fukui, to explore the potential energy surface (PES) of clusters and molecules using the Coulombic integral between the Fukui functions in the first screening of the best individuals. In the process, small stable molecules or clusters whose combination has the stoichiometry of the explored species are used as assembly units. First, a small set of candidates has been selected from a large and stochastically generated (Kick) population according to the maximum value of the Coulombic integral between the Fukui functions of both fragments. Subsequently, these few candidates are optimized using a gradient method and density functional theory (DFT) calculations. The performance of the program has been evaluated to explore the PES of various systems, including atomic and molecular clusters. In most cases studied, the global minimum (GM) has been identified with a low computational cost. The strategy does not allow to identify the GM of some silicon clusters; however, it predicts local minima very close in energy to the GM that could be used as the initial population of evolutionary algorithms.

摘要

在此,我们介绍一种名为Kick - Fukui的混合方法,通过在最佳个体的首次筛选中使用福井函数之间的库仑积分来探索团簇和分子的势能面(PES)。在此过程中,将其组合具有所探索物种化学计量比的小稳定分子或团簇用作组装单元。首先,根据两个片段的福井函数之间库仑积分的最大值,从大量随机生成的(Kick)群体中选择一小部分候选者。随后,使用梯度方法和密度泛函理论(DFT)计算对这少数候选者进行优化。该程序的性能已通过探索包括原子和分子团簇在内的各种系统的PES进行了评估。在大多数研究案例中,已以较低的计算成本识别出全局最小值(GM)。该策略无法识别某些硅团簇的GM;然而,它预测出能量非常接近GM的局部最小值,这些局部最小值可作为进化算法的初始群体。

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