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通过氨基酸残基保守进化模式,SARS-CoV 和 SARS-CoV-2 均具有 ACE2 结合作用。

Featuring ACE2 binding SARS-CoV and SARS-CoV-2 through a conserved evolutionary pattern of amino acid residues.

机构信息

Departamento de Física, FFCLRP, Universidade de São Paulo, Ribeirão Preto, SP, Brazil.

出版信息

J Biomol Struct Dyn. 2022;40(22):11719-11728. doi: 10.1080/07391102.2021.1965028. Epub 2021 Sep 6.

Abstract

Spike (S) glycoproteins mediate the coronavirus entry into the host cell. The S1 subunit of S-proteins contains the receptor-binding domain (RBD) that is able to recognize different host receptors, highlighting its remarkable capacity to adapt to their hosts along the viral evolution. While RBD in spike proteins is determinant for the virus-receptor interaction, the active residues lie at the receptor-binding motif (RBM), a region located in RBD that plays a fundamental role binding the outer surface of their receptors. Here, we address the hypothesis that SARS-CoV and SARS-CoV-2 strains able to use angiotensin-converting enzyme 2 (ACE2) proteins have adapted their RBM along the viral evolution to explore specific conformational topology driven by the residues YGF to infect host cells. We also speculate that this YGF-based mechanism can act as a protein signature located at the RBM to distinguish coronaviruses able to use ACE2 as a cell entry receptor.Communicated by Ramaswamy H. Sarma.

摘要

刺突(S)糖蛋白介导冠状病毒进入宿主细胞。S 蛋白的 S1 亚基包含受体结合域(RBD),能够识别不同的宿主受体,突出了其沿着病毒进化适应宿主的非凡能力。虽然 Spike 蛋白中的 RBD 决定了病毒-受体相互作用,但活性残基位于受体结合基序(RBM),该区域位于 RBD 中,在与受体的外表面结合中起着至关重要的作用。在这里,我们提出了一个假设,即能够使用血管紧张素转换酶 2(ACE2)蛋白的 SARS-CoV 和 SARS-CoV-2 株已经沿着病毒进化来适应它们的 RBM,以探索由残基 YGF 驱动的特定构象拓扑结构,从而感染宿主细胞。我们还推测,这种基于 YGF 的机制可以作为位于 RBM 的蛋白质特征,以区分能够将 ACE2 用作细胞进入受体的冠状病毒。由 Ramaswamy H. Sarma 传达。

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