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基于基因组挖掘和分子网络的海洋兼性细菌 sp. MEXU 27854 的代谢组学研究。

Genome Mining and Molecular Networking-Based Metabolomics of the Marine Facultative sp. MEXU 27854.

机构信息

Facultad de Química, Universidad Nacional Autónoma de México, Ciudad de México 04510, Mexico.

Department of Chemistry and Biochemistry, University of North Carolina at Greensboro, Greensboro, NC 27402, USA.

出版信息

Molecules. 2021 Sep 3;26(17):5362. doi: 10.3390/molecules26175362.

Abstract

The marine-facultative sp. MEXU 27854, isolated from the Caleta Bay in Acapulco, Guerrero, Mexico, has provided an interesting diversity of secondary metabolites, including a series of rare dioxomorpholines, peptides, and butyrolactones. Here, we report on the genomic data, which consists of 11 contigs (N50~3.95 Mb) with a ~30.75 Mb total length of assembly. Genome annotation resulted in the prediction of 10,822 putative genes. Functional annotation was accomplished by BLAST searching protein sequences with different public databases. Of the predicted genes, 75% were assigned gene ontology terms. From the 67 BGCs identified, ~60% belong to the NRPS and NRPS-like classes. Putative BGCs for the dioxomorpholines and other metabolites were predicted by extensive genome mining. In addition, metabolomic molecular networking analysis allowed the annotation of all isolated compounds and revealed the biosynthetic potential of this fungus. This work represents the first report of whole-genome sequencing and annotation from a marine-facultative fungal strain isolated from Mexico.

摘要

从墨西哥格雷罗州阿卡普尔科的卡尔塔湾分离出的海洋兼性 sp. MEXU 27854 提供了一系列有趣的次生代谢产物,包括一系列罕见的二氧吗啡啉、肽和丁内酯。在这里,我们报告了基因组数据,它由 11 个 contigs(N50~3.95 Mb)组成,组装的总长度约为 30.75 Mb。基因组注释预测了 10822 个可能的基因。通过将蛋白质序列与不同的公共数据库进行 BLAST 搜索来完成功能注释。在预测的基因中,75%被分配了基因本体论术语。在鉴定的 67 个 BGC 中,约 60%属于 NRPS 和 NRPS 样类。通过广泛的基因组挖掘预测了二氧吗啡啉和其他代谢物的假定 BGC。此外,代谢组学分子网络分析允许对所有分离的化合物进行注释,并揭示了该真菌的生物合成潜力。这项工作代表了从墨西哥分离的海洋兼性真菌菌株的全基因组测序和注释的首次报告。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c45f/8433890/a72ac6d53c92/molecules-26-05362-g001.jpg

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