• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

构象重排使 RiPP 生物合成中的迭代骨架 N-甲基化成为可能。

Conformational rearrangements enable iterative backbone N-methylation in RiPP biosynthesis.

机构信息

Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota-Twin Cities, St. Paul, MN, USA.

BioTechnology Institute, University of Minnesota-Twin Cities, St. Paul, MN, USA.

出版信息

Nat Commun. 2021 Sep 9;12(1):5355. doi: 10.1038/s41467-021-25575-7.

DOI:10.1038/s41467-021-25575-7
PMID:34504067
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8429565/
Abstract

Peptide backbone α-N-methylations change the physicochemical properties of amide bonds to provide structural constraints and other favorable characteristics including biological membrane permeability to peptides. Borosin natural product pathways are the only known ribosomally encoded and posttranslationally modified peptides (RiPPs) pathways to incorporate backbone α-N-methylations on translated peptides. Here we report the discovery of type IV borosin natural product pathways (termed 'split borosins'), featuring an iteratively acting α-N-methyltransferase and separate precursor peptide substrate from the metal-respiring bacterium Shewanella oneidensis. A series of enzyme-precursor complexes reveal multiple conformational states for both α-N-methyltransferase and substrate. Along with mutational and kinetic analyses, our results give rare context into potential strategies for iterative maturation of RiPPs.

摘要

肽主链的α-N-甲基化改变酰胺键的物理化学性质,为肽提供结构约束和其他有利特性,包括生物膜对肽的通透性。Borosin 天然产物途径是唯一已知的核糖体编码和翻译后修饰肽(RiPPs)途径,可在翻译后的肽上掺入主链α-N-甲基化。在这里,我们报告了发现 IV 型 Borosin 天然产物途径(称为“分裂 Borosin”),其特征是具有迭代作用的α-N-甲基转移酶和来自金属呼吸细菌 Shewanella oneidensis 的单独前体肽底物。一系列酶-前体复合物揭示了α-N-甲基转移酶和底物的多种构象状态。通过突变和动力学分析,我们的结果为 RiPPs 的迭代成熟提供了罕见的潜在策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9207/8429565/53abec08d9b9/41467_2021_25575_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9207/8429565/5f03dde30362/41467_2021_25575_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9207/8429565/87fc93235559/41467_2021_25575_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9207/8429565/980012d94054/41467_2021_25575_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9207/8429565/cbe25bef009e/41467_2021_25575_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9207/8429565/cf73372765fd/41467_2021_25575_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9207/8429565/595dc4999517/41467_2021_25575_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9207/8429565/53abec08d9b9/41467_2021_25575_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9207/8429565/5f03dde30362/41467_2021_25575_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9207/8429565/87fc93235559/41467_2021_25575_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9207/8429565/980012d94054/41467_2021_25575_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9207/8429565/cbe25bef009e/41467_2021_25575_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9207/8429565/cf73372765fd/41467_2021_25575_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9207/8429565/595dc4999517/41467_2021_25575_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9207/8429565/53abec08d9b9/41467_2021_25575_Fig7_HTML.jpg

相似文献

1
Conformational rearrangements enable iterative backbone N-methylation in RiPP biosynthesis.构象重排使 RiPP 生物合成中的迭代骨架 N-甲基化成为可能。
Nat Commun. 2021 Sep 9;12(1):5355. doi: 10.1038/s41467-021-25575-7.
2
Diverse Protein Architectures and α--Methylation Patterns Define Split Borosin RiPP Biosynthetic Gene Clusters.多样的蛋白质结构和 α-甲基化模式定义了分裂博里森菌素 RiPP 生物合成基因簇。
ACS Chem Biol. 2022 Apr 15;17(4):908-917. doi: 10.1021/acschembio.1c01002. Epub 2022 Mar 17.
3
Distinct Autocatalytic α- N-Methylating Precursors Expand the Borosin RiPP Family of Peptide Natural Products.独特的自催化α-N-甲基化前体扩展了硼酸 RiPP 家族的肽天然产物。
J Am Chem Soc. 2019 Jun 19;141(24):9637-9644. doi: 10.1021/jacs.9b03690. Epub 2019 Jun 5.
4
Bioinformatic Expansion of Borosins Uncovers Trans-Acting Peptide Backbone -Methyltransferases in Bacteria.生物信息学扩展揭示了细菌中反式作用肽骨架 -甲基转移酶
Biochemistry. 2022 Feb 1;61(3):183-194. doi: 10.1021/acs.biochem.1c00764. Epub 2022 Jan 21.
5
RiPP enzyme heterocomplex structure-guided discovery of a bacterial borosin α--methylated peptide natural product.基于核糖体合成和翻译后修饰肽(RiPP)酶异源复合物结构指导发现一种细菌硼辛α-甲基化肽天然产物。
RSC Chem Biol. 2023 Aug 21;4(10):804-816. doi: 10.1039/d3cb00093a. eCollection 2023 Oct 4.
6
Autocatalytic backbone N-methylation in a family of ribosomal peptide natural products.核糖体肤氨酸天然产物家族中的自动催化骨架 N-甲基化。
Nat Chem Biol. 2017 Aug;13(8):833-835. doi: 10.1038/nchembio.2393. Epub 2017 Jun 5.
7
A Self-Sacrificing N-Methyltransferase Is the Precursor of the Fungal Natural Product Omphalotin.自牺牲 N-甲基转移酶是真菌天然产物 omphalotin 的前体。
Angew Chem Int Ed Engl. 2017 Aug 7;56(33):9994-9997. doi: 10.1002/anie.201703488. Epub 2017 Jul 17.
8
Molecular Basis for Autocatalytic Backbone N-Methylation in RiPP Natural Product Biosynthesis.在 RiPP 天然产物生物合成中自动催化骨架 N-甲基化的分子基础。
ACS Chem Biol. 2018 Oct 19;13(10):2989-2999. doi: 10.1021/acschembio.8b00668. Epub 2018 Sep 25.
9
A prevalent peptide-binding domain guides ribosomal natural product biosynthesis.一种普遍存在的肽结合结构域指导核糖体天然产物生物合成。
Nat Chem Biol. 2015 Aug;11(8):564-70. doi: 10.1038/nchembio.1856. Epub 2015 Jul 13.
10
Discovery of Borosin Catalytic Strategies and Function through Bioinformatic Profiling.通过生物信息学分析发现硼丝氨酸的催化策略和功能。
ACS Chem Biol. 2024 May 17;19(5):1116-1124. doi: 10.1021/acschembio.4c00066. Epub 2024 May 2.

引用本文的文献

1
Anticancer Ribosomally Synthesized and Post-Translationally Modified Peptides from Plants: Structures, Therapeutic Potential, and Future Directions.来自植物的抗癌核糖体合成及翻译后修饰肽:结构、治疗潜力及未来方向
Curr Issues Mol Biol. 2024 Dec 26;47(1):6. doi: 10.3390/cimb47010006.
2
α-N-Methyltransferase regiospecificity is mediated by proximal, redundant enzyme-substrate interactions.α-N-甲基转移酶的区域特异性由近端、冗余的酶-底物相互作用介导。
Protein Sci. 2025 Feb;34(2):e70021. doi: 10.1002/pro.70021.
3
Genome Mining and Biological Engineering of Type III Borosins from Bacteria.

本文引用的文献

1
Steric complementarity directs sequence promiscuous leader binding in RiPP biosynthesis.立体互补指导 RiPP 生物合成中序列混杂的先导结合。
Proc Natl Acad Sci U S A. 2019 Nov 26;116(48):24049-24055. doi: 10.1073/pnas.1908364116. Epub 2019 Nov 12.
2
Structural Basis of Leader Peptide Recognition in Lasso Peptide Biosynthesis Pathway.拉索肽生物合成途径中领袖肽识别的结构基础。
ACS Chem Biol. 2019 Jul 19;14(7):1619-1627. doi: 10.1021/acschembio.9b00348. Epub 2019 Jun 24.
3
Mechanistic Basis for Ribosomal Peptide Backbone Modifications.
从细菌中挖掘 III 型博洛辛的基因组和生物工程。
Int J Mol Sci. 2024 Aug 29;25(17):9350. doi: 10.3390/ijms25179350.
4
Methyltransferases from RiPP pathways: shaping the landscape of natural product chemistry.来自核糖体合成和翻译后修饰肽(RiPP)途径的甲基转移酶:塑造天然产物化学的格局
Beilstein J Org Chem. 2024 Jul 18;20:1652-1670. doi: 10.3762/bjoc.20.147. eCollection 2024.
5
Discovery of Borosin Catalytic Strategies and Function through Bioinformatic Profiling.通过生物信息学分析发现硼丝氨酸的催化策略和功能。
ACS Chem Biol. 2024 May 17;19(5):1116-1124. doi: 10.1021/acschembio.4c00066. Epub 2024 May 2.
6
An intramolecular macrocyclase in plant ribosomal peptide biosynthesis.植物核糖体肽生物合成中的分子内大环化酶。
Nat Chem Biol. 2024 Apr;20(4):530-540. doi: 10.1038/s41589-024-01552-1. Epub 2024 Feb 14.
7
Disordered regions in proteusin peptides guide post-translational modification by a flavin-dependent RiPP brominase.变形蛋白肽中的无规则区域通过黄素依赖的 RiPP 溴化酶指导翻译后修饰。
Nat Commun. 2024 Feb 10;15(1):1265. doi: 10.1038/s41467-024-45593-5.
8
Structural and mechanistic basis for RiPP epimerization by a radical SAM enzyme.通过自由基 SAM 酶对 RiPP 差向异构化的结构和机制基础。
Nat Chem Biol. 2024 Mar;20(3):382-391. doi: 10.1038/s41589-023-01493-1. Epub 2023 Dec 29.
9
Deep Learning-Driven Library Design for the Discovery of Bioactive Thiopeptides.用于发现生物活性硫肽的深度学习驱动的文库设计
ACS Cent Sci. 2023 Nov 7;9(11):2150-2160. doi: 10.1021/acscentsci.3c00957. eCollection 2023 Nov 22.
10
RiPP enzyme heterocomplex structure-guided discovery of a bacterial borosin α--methylated peptide natural product.基于核糖体合成和翻译后修饰肽(RiPP)酶异源复合物结构指导发现一种细菌硼辛α-甲基化肽天然产物。
RSC Chem Biol. 2023 Aug 21;4(10):804-816. doi: 10.1039/d3cb00093a. eCollection 2023 Oct 4.
核糖体肽主链修饰的机制基础。
ACS Cent Sci. 2019 May 22;5(5):842-851. doi: 10.1021/acscentsci.9b00124. Epub 2019 Apr 16.
4
Distinct Autocatalytic α- N-Methylating Precursors Expand the Borosin RiPP Family of Peptide Natural Products.独特的自催化α-N-甲基化前体扩展了硼酸 RiPP 家族的肽天然产物。
J Am Chem Soc. 2019 Jun 19;141(24):9637-9644. doi: 10.1021/jacs.9b03690. Epub 2019 Jun 5.
5
The role of protein-protein interactions in the biosynthesis of ribosomally synthesized and post-translationally modified peptides.蛋白质-蛋白质相互作用在核糖体合成和翻译后修饰肽的生物合成中的作用。
Nat Prod Rep. 2019 Nov 13;36(11):1576-1588. doi: 10.1039/c8np00064f.
6
Architecture of Microcin B17 Synthetase: An Octameric Protein Complex Converting a Ribosomally Synthesized Peptide into a DNA Gyrase Poison.微菌素 B17 合成酶的结构:一种将核糖体合成的肽转化为 DNA 拓扑异构酶抑制剂的八聚体蛋白复合物。
Mol Cell. 2019 Feb 21;73(4):749-762.e5. doi: 10.1016/j.molcel.2018.11.032. Epub 2019 Jan 17.
7
Molecular Basis for Autocatalytic Backbone N-Methylation in RiPP Natural Product Biosynthesis.在 RiPP 天然产物生物合成中自动催化骨架 N-甲基化的分子基础。
ACS Chem Biol. 2018 Oct 19;13(10):2989-2999. doi: 10.1021/acschembio.8b00668. Epub 2018 Sep 25.
8
A molecular mechanism for the enzymatic methylation of nitrogen atoms within peptide bonds.一种酶促将肽键内氮原子甲基化的分子机制。
Sci Adv. 2018 Aug 24;4(8):eaat2720. doi: 10.1126/sciadv.aat2720. eCollection 2018 Aug.
9
Structural insights into enzymatic [4+2] -cycloaddition in thiopeptide antibiotic biosynthesis.在硫肽类抗生素生物合成中酶促[4+2] -环加成的结构见解。
Proc Natl Acad Sci U S A. 2017 Dec 5;114(49):12928-12933. doi: 10.1073/pnas.1716035114. Epub 2017 Nov 20.
10
Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition.肽修饰自由基 S-腺苷甲硫氨酸酶 SuiB 的结构阐明了底物识别的基础。
Proc Natl Acad Sci U S A. 2017 Sep 26;114(39):10420-10425. doi: 10.1073/pnas.1703663114. Epub 2017 Sep 11.