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一种栽培油茶物种的完整叶绿体基因组, 。 (你提供的原文似乎不完整,请检查一下是否准确。)

Complete chloroplast genome of a cultivated oil camellia species, .

作者信息

Xu Yufen, Liu Yanju, Jia Xiaocheng

机构信息

Hainan Key Laboratory of Tropical Oil Crops Biology/Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang, China.

出版信息

Mitochondrial DNA B Resour. 2021 Dec 10;7(1):43-45. doi: 10.1080/23802359.2021.2008836. eCollection 2022.

DOI:10.1080/23802359.2021.2008836
PMID:34912966
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8667929/
Abstract

Hu et T. C. Huang, belonging to the Theaceae family, is an excellent landscape tree species with high ornamental value. It is also an important woody oil-bearing plant with high economic value. This study reports the first complete chloroplast genome sequence of (GenBank accession number: MZ054232). Its whole chloroplast genome is 156,953 bp long with an overall GC content of 37.31%, which is composed of a large single copy region (86,631 bp), a small single copy region (18,402 bp), and a pair of inverted repeat regions (25,960 bp each). A total of 135 genes were predicted in this genome, namely eight ribosomal RNA genes, 37 transfer RNA genes, and 90 protein-coding genes. Based on maximum likelihood analysis results, we found that the species are clustered into a distinct branch, and the phylogenetic relationships among , , and were the closest.

摘要

Hu和T. C. Huang属于山茶科,是具有高观赏价值的优良园林树种。它也是具有高经济价值的重要木本油料植物。本研究报道了(GenBank登录号:MZ054232)的首个完整叶绿体基因组序列。其完整叶绿体基因组长度为156,953 bp,总体GC含量为37.31%,由一个大单拷贝区域(86,631 bp)、一个小单拷贝区域(18,402 bp)和一对反向重复区域(各25,960 bp)组成。该基因组共预测到135个基因,即8个核糖体RNA基因、37个转运RNA基因和90个蛋白质编码基因。基于最大似然分析结果,我们发现该物种聚为一个独特的分支,且该物种与该物种、该物种之间的系统发育关系最为密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9cf4/8667929/da623a8c1c58/TMDN_A_2008836_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9cf4/8667929/da623a8c1c58/TMDN_A_2008836_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9cf4/8667929/da623a8c1c58/TMDN_A_2008836_F0001_B.jpg

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Genome Biol. 2020 Sep 10;21(1):241. doi: 10.1186/s13059-020-02154-5.
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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era.IQ-TREE 2:基因组时代系统发育推断的新模型和有效方法。
Mol Biol Evol. 2020 May 1;37(5):1530-1534. doi: 10.1093/molbev/msaa015.
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CPGAVAS2, an integrated plastome sequence annotator and analyzer.CPGAVAS2,一个集成的质体基因组序列注释和分析器。
Nucleic Acids Res. 2019 Jul 2;47(W1):W65-W73. doi: 10.1093/nar/gkz345.
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Insights into the historical assembly of East Asian subtropical evergreen broadleaved forests revealed by the temporal history of the tea family.揭示东亚亚热带常绿阔叶林历史组装的茶科植物时间历史。
New Phytol. 2017 Aug;215(3):1235-1248. doi: 10.1111/nph.14683.
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GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
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