• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

膜翅目基因组中A和T转座子的多样性与进化

Diversity and Evolution of and Transposons in the Apoidea Genomes.

作者信息

Liu Yibing, Zong Wencheng, Diaby Mohamed, Lin Zheguang, Wang Saisai, Gao Bo, Ji Ting, Song Chengyi

机构信息

College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China.

出版信息

Biology (Basel). 2021 Sep 20;10(9):940. doi: 10.3390/biology10090940.

DOI:10.3390/biology10090940
PMID:34571816
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8472432/
Abstract

Bees (Apoidea), the largest and most crucial radiation of pollinators, play a vital role in the ecosystem balance. Transposons are widely distributed in nature and are important drivers of species diversity. However, transposons are rarely reported in important pollinators such as bees. Here, we surveyed 37 bee genomesin Apoidea, annotated the and transposons in the genome of each species, and performed a phylogenetic analysis and determined their overall distribution. The and families showed high diversity and low abundance in the 37 species, and their proportion was significantly higher in solitary bees than in social bees. DD34D/ was found to be distributed in almost all species and was found in , , and and may still be active. Using horizontal transfer analysis, we found that DD29-30D/ may have experienced horizontal transfer (HT) events. The current study displayed the evolution profiles (including diversity, activity, and abundance) of the and transposons across 37 species of Apoidea. Our data revealed their contributions to the genomic variations across these species and facilitated in understanding of the genome evolution of this lineage.

摘要

蜜蜂(膜翅目细腰亚目针尾部蜜蜂总科)是传粉者中种类最多且最为关键的类群,在生态系统平衡中发挥着至关重要的作用。转座子在自然界广泛分布,是物种多样性的重要驱动因素。然而,在蜜蜂等重要传粉者中,转座子的报道却很少。在此,我们调查了膜翅目细腰亚目针尾部蜜蜂总科的37个蜜蜂基因组,注释了每个物种基因组中的 和 转座子,并进行了系统发育分析,确定了它们的总体分布情况。 和 家族在这37个物种中表现出高多样性和低丰度,且在独居蜂中的比例显著高于群居蜂。发现DD34D/ 几乎分布于所有物种中,并且在 、 、 和 中被发现, 可能仍具有活性。通过水平转移分析,我们发现DD29 - 30D/ 可能经历了水平转移(HT)事件。当前研究展示了膜翅目细腰亚目针尾部蜜蜂总科37个物种中 和 转座子的进化概况(包括多样性、活性和丰度)。我们的数据揭示了它们对这些物种基因组变异的贡献,有助于理解该谱系的基因组进化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a57/8472432/7f9812f6913a/biology-10-00940-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a57/8472432/926a4795e6c5/biology-10-00940-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a57/8472432/534488326d79/biology-10-00940-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a57/8472432/2db3b0aa095f/biology-10-00940-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a57/8472432/9a7d6da50736/biology-10-00940-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a57/8472432/7f9812f6913a/biology-10-00940-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a57/8472432/926a4795e6c5/biology-10-00940-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a57/8472432/534488326d79/biology-10-00940-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a57/8472432/2db3b0aa095f/biology-10-00940-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a57/8472432/9a7d6da50736/biology-10-00940-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a57/8472432/7f9812f6913a/biology-10-00940-g005.jpg

相似文献

1
Diversity and Evolution of and Transposons in the Apoidea Genomes.膜翅目基因组中A和T转座子的多样性与进化
Biology (Basel). 2021 Sep 20;10(9):940. doi: 10.3390/biology10090940.
2
Evolution of , a separate superfamily of transposons, revealing recurrent domestication events in vertebrates.一个独立的转座子超家族的进化,揭示了脊椎动物中反复发生的驯化事件。
Mob DNA. 2020 Jul 22;11:25. doi: 10.1186/s13100-020-00220-0. eCollection 2020.
3
, a DD36E family of transposons newly discovered in animals.一种在动物中新发现的DD36E转座子家族。
Mob DNA. 2019 Nov 23;10:45. doi: 10.1186/s13100-019-0188-x. eCollection 2019.
4
Evolution and domestication of transposons in the genome of African coelacanth ().转座子在非洲腔棘鱼基因组中的进化和驯化()。
Genome. 2020 Aug;63(8):375-386. doi: 10.1139/gen-2019-0216. Epub 2020 Apr 8.
5
Divergent evolution profiles of DD37D and DD39D families of Tc1/mariner transposons in eukaryotes.真核生物中 Tc1/mariner 转座子的 DD37D 和 DD39D 家族的趋异进化模式。
Mol Phylogenet Evol. 2021 Aug;161:107143. doi: 10.1016/j.ympev.2021.107143. Epub 2021 Mar 10.
6
Phylogenetic analysis of the superfamily reveals the unexplored diversity of -like elements.对该超家族的系统发育分析揭示了类元件未被探索的多样性。
Mob DNA. 2020 Jun 29;11:21. doi: 10.1186/s13100-020-00212-0. eCollection 2020.
7
Characterization of autonomous families of Tc1/mariner transposons in neoteleost genomes.新硬骨鱼基因组中Tc1/水手转座子自主家族的特征分析。
Mar Genomics. 2017 Aug;34:67-77. doi: 10.1016/j.margen.2017.05.003. Epub 2017 May 22.
8
An Analysis of IS630/Tc1/mariner Transposons in the Genome of a Pacific Oyster, Crassostrea gigas.太平洋牡蛎基因组中 IS630/Tc1/mariner 转座子的分析。
J Mol Evol. 2018 Oct;86(8):566-580. doi: 10.1007/s00239-018-9868-2. Epub 2018 Oct 3.
9
Expanding the diversity of the IS630-Tc1-mariner superfamily: discovery of a unique DD37E transposon and reclassification of the DD37D and DD39D transposons.扩展IS630-Tc1-水手超家族的多样性:发现一种独特的DD37E转座子并对DD37D和DD39D转座子进行重新分类。
Genetics. 2001 Nov;159(3):1103-15. doi: 10.1093/genetics/159.3.1103.
10
The IS630/Tc1/mariner transposons in three ctenophore genomes.三个栉水母基因组中的IS630/Tc1/水手转座子。
Mol Phylogenet Evol. 2021 Oct;163:107231. doi: 10.1016/j.ympev.2021.107231. Epub 2021 Jun 13.

引用本文的文献

1
Comprehensive Genomic Analysis Reveals Novel Transposable Element-Derived MicroRNA Regulating Caste Differentiation in Honeybees.综合基因组分析揭示了调控蜜蜂等级分化的新型转座子衍生微小RNA。
Mol Biol Evol. 2025 Apr 1;42(4). doi: 10.1093/molbev/msaf074.
2
Evolution of Transposons in Apoidea.蜜蜂总科中转座子的进化
Insects. 2023 Apr 21;14(4):402. doi: 10.3390/insects14040402.
3
High Expression of POGK Predicts Poor Prognosis in Patients with Hepatocellular Carcinoma.POGK 高表达预示着肝细胞癌患者预后不良。

本文引用的文献

1
Divergent evolution profiles of DD37D and DD39D families of Tc1/mariner transposons in eukaryotes.真核生物中 Tc1/mariner 转座子的 DD37D 和 DD39D 家族的趋异进化模式。
Mol Phylogenet Evol. 2021 Aug;161:107143. doi: 10.1016/j.ympev.2021.107143. Epub 2021 Mar 10.
2
Authoritative subspecies diagnosis tool for European honey bees based on ancestry informative SNPs.基于祖先信息单核苷酸多态性的欧洲蜜蜂权威亚种诊断工具。
BMC Genomics. 2021 Feb 3;22(1):101. doi: 10.1186/s12864-021-07379-7.
3
Intruder (DD38E), a recently evolved sibling family of DD34E/Tc1 transposons in animals.
Curr Oncol. 2022 Nov 14;29(11):8650-8667. doi: 10.3390/curroncol29110682.
4
Revealing Landscapes of Transposable Elements in Species by Meta-Analysis.通过荟萃分析揭示物种中转座元件的景观。
Insects. 2022 Aug 3;13(8):698. doi: 10.3390/insects13080698.
5
Revisiting the Transposon Evolution Revealing Extensive Involvement in the Shaping of Mammal Genomes.重新审视转座子进化:揭示其在哺乳动物基因组塑造过程中的广泛参与
Biology (Basel). 2022 Jun 16;11(6):921. doi: 10.3390/biology11060921.
入侵者(DD38E),动物中DD34E/Tc1转座子最近进化出的一个姊妹家族。
Mob DNA. 2020 Dec 10;11(1):32. doi: 10.1186/s13100-020-00227-7.
4
Mosquito genomes are frequently invaded by transposable elements through horizontal transfer.蚊子基因组经常通过水平转移被转座元件入侵。
PLoS Genet. 2020 Nov 30;16(11):e1008946. doi: 10.1371/journal.pgen.1008946. eCollection 2020 Nov.
5
Evolution of , a separate superfamily of transposons, revealing recurrent domestication events in vertebrates.一个独立的转座子超家族的进化,揭示了脊椎动物中反复发生的驯化事件。
Mob DNA. 2020 Jul 22;11:25. doi: 10.1186/s13100-020-00220-0. eCollection 2020.
6
Multiple Invasions of Visitor, a DD41D Family of Tc1/mariner Transposons, throughout the Evolution of Vertebrates.多种访客 DD41D 家族 Tc1/mariner 转座子在脊椎动物进化过程中的入侵。
Genome Biol Evol. 2020 Jul 1;12(7):1060-1073. doi: 10.1093/gbe/evaa135.
7
A Chromosome-Scale Assembly of the Asian Honeybee Genome.亚洲蜜蜂基因组的染色体水平组装
Front Genet. 2020 Mar 27;11:279. doi: 10.3389/fgene.2020.00279. eCollection 2020.
8
Traveler, a New DD35E Family of Tc1/Mariner Transposons, Invaded Vertebrates Very Recently.旅行者转座子,一个新的 Tc1/Mariner 转座子 DD35E 家族,最近侵入了脊椎动物。
Genome Biol Evol. 2020 Mar 1;12(3):66-76. doi: 10.1093/gbe/evaa034.
9
Whole Genome Sequencing and Assembly of the Asian Honey Bee Apis dorsata.亚洲熊蜂 Apis dorsata 的全基因组测序和组装。
Genome Biol Evol. 2020 Jan 1;12(1):3677-3683. doi: 10.1093/gbe/evz277.
10
, a DD36E family of transposons newly discovered in animals.一种在动物中新发现的DD36E转座子家族。
Mob DNA. 2019 Nov 23;10:45. doi: 10.1186/s13100-019-0188-x. eCollection 2019.