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油菜(L.)谷胱甘肽过氧化物酶(GPX)基因家族的全基因组特征揭示了它们在多种非生物胁迫响应和激素信号传导中的作用。

Genome-Wide Characterization of Glutathione Peroxidase (GPX) Gene Family in Rapeseed ( L.) Revealed Their Role in Multiple Abiotic Stress Response and Hormone Signaling.

作者信息

Li Wei, Huai Xuemin, Li Peitao, Raza Ali, Mubarik Muhammad Salman, Habib Madiha, Fiaz Sajid, Zhang Binbin, Pan Jun, Khan Rao Sohail Ahmad

机构信息

Beijing Goldenway Bio-Tech Co., Ltd., Chaoyang District, Beijing 100015, China.

Fujian Provincial Key Laboratory of Crop Molecular and Cell Biology, Oil Crops Research Institute, Center of Legume Crop Genetics and Systems Biology, College of Agriculture, Fujian Agriculture and Forestry University (FAFU), Fuzhou 350002, China.

出版信息

Antioxidants (Basel). 2021 Sep 17;10(9):1481. doi: 10.3390/antiox10091481.

DOI:10.3390/antiox10091481
PMID:34573113
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8472808/
Abstract

Plant glutathione peroxidases (GPXs) are the main enzymes in the antioxidant defense system that sustain HO homeostasis and normalize plant reaction to abiotic stress conditions. To understand the major roles of the gene family in rapeseed ( L.), for the first time, a genome-wide study identified 25 genes in the rapeseed genome. The phylogenetic analysis discovered that genes were grouped into four major groups (Group I-Group IV) from rapeseed and three closely interrelated plant species. The universal investigation uncovered that the gene experienced segmental duplications and positive selection pressure. Gene structure and motifs examination recommended that most of the genes demonstrated a comparatively well-maintained exon-intron and motifs arrangement within the identical group. Likewise, we recognized five hormones-, four stress-, and numerous light-reactive -elements in the promoters of . Five putative bna-miRNAs from two families were also prophesied, targeting six genes. Gene ontology annotation results proved the main role of in antioxidant defense systems, ROS, and response to stress stimulus. Several genes revealed boosted expression profiles in many developmental tissues/organs, i.e., root, seed, leaf, stem, flower, and silique. The qRT-PCR based expression profiling exhibited that two genes ( and ) were suggestively up-regulated against different hormones (ABA, IAA, and MeJA) and abiotic stress (salinity, cold, waterlogging, and drought) treatments. In short, our discoveries provide a basis for additional functional studies on the genes in future rapeseed breeding programs.

摘要

植物谷胱甘肽过氧化物酶(GPXs)是抗氧化防御系统中的主要酶类,可维持过氧化氢(HO)的稳态并使植物对非生物胁迫条件的反应正常化。为了解该基因家族在油菜(L.)中的主要作用,首次进行了全基因组研究,在油菜基因组中鉴定出25个GPX基因。系统发育分析发现,来自油菜和三种密切相关植物物种的GPX基因被分为四个主要组(第一组 - 第四组)。全面研究发现,GPX基因经历了片段重复和正选择压力。基因结构和基序检查表明,同一组内的大多数GPX基因显示出相对保守的外显子 - 内含子和基序排列。同样,我们在GPX基因的启动子中识别出五种激素反应元件、四种胁迫反应元件和多种光反应元件。还预测了来自两个家族的五个假定的bna - miRNAs,它们靶向六个GPX基因。基因本体注释结果证明了GPX在抗氧化防御系统、活性氧(ROS)以及对胁迫刺激的反应中的主要作用。几个GPX基因在许多发育组织/器官中,即根、种子、叶、茎、花和角果中,显示出表达水平升高。基于qRT - PCR的表达谱分析表明,两个基因(和)在不同激素(脱落酸、吲哚乙酸和茉莉酸甲酯)和非生物胁迫(盐度、寒冷、涝渍和干旱)处理下显著上调。简而言之,我们的发现为未来油菜育种计划中对GPX基因的进一步功能研究提供了基础。

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