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利用免疫信息学方法开发一种保守嵌合疫苗以诱导针对[病原体名称未给出]的强烈免疫反应。

Development of a Conserved Chimeric Vaccine for Induction of Strong Immune Response against Using Immunoinformatics Approaches.

作者信息

Chatterjee Rahul, Sahoo Panchanan, Mahapatra Soumya Ranjan, Dey Jyotirmayee, Ghosh Mrinmoy, Kushwaha Gajraj Singh, Misra Namrata, Suar Mrutyunjay, Raina Vishakha, Son Young-Ok

机构信息

Kalinga Institute of Industrial Technology (KIIT), School of Biotechnology, Deemed to Be University, Bhubaneswar 751024, India.

Kalinga Institute of Medical Sciences, Kalinga Institute of Industrial Technology (KIIT), Deemed to Be University, Bhubaneswar 751024, India.

出版信息

Vaccines (Basel). 2021 Sep 18;9(9):1038. doi: 10.3390/vaccines9091038.

Abstract

is one of the most notorious Gram-positive bacteria with a very high mortality rate. The WHO has listed as one of the ESKAPE pathogens requiring urgent research and development efforts to fight against it. Yet there is a major layback in the advancement of effective vaccines against this multidrug-resistant pathogen. SdrD and SdrE proteins are attractive immunogen candidates as they are conserved among all the strains and contribute specifically to bacterial adherence to the host cells. Furthermore, these proteins are predicted to be highly antigenic and essential for pathogen survival. Therefore, in this study, using the immunoinformatics approach, a novel vaccine candidate was constructed using highly immunogenic conserved T-cell and B-cell epitopes along with specific linkers, adjuvants, and consequently modeled for docking with human Toll-like receptor 2. Additionally, physicochemical properties, secondary structure, disulphide engineering, and population coverage analysis were also analyzed for the vaccine. The constructed vaccine showed good results of worldwide population coverage and a promising immune response. For evaluation of the stability of the vaccine-TLR-2 docked complex, a molecular dynamics simulation was performed. The constructed vaccine was subjected to in silico immune simulations by C-ImmSim and Immune simulation significantly provided high levels of immunoglobulins, T-helper cells, T-cytotoxic cells, and INF-γ. Lastly, upon cloning, the vaccine protein was reverse transcribed into a DNA sequence and cloned into a pET28a (+) vector to ensure translational potency and microbial expression. The overall results of the study showed that the designed novel chimeric vaccine can simultaneously elicit humoral and cell-mediated immune responses and is a reliable construct for subsequent in vivo and in vitro studies against the pathogen.

摘要

是最臭名昭著的革兰氏阳性菌之一,死亡率极高。世界卫生组织已将其列为需要紧急研发以对抗的ESKAPE病原体之一。然而,针对这种多重耐药病原体的有效疫苗研发进展存在重大滞后。SdrD和SdrE蛋白是有吸引力的免疫原候选物,因为它们在所有菌株中都保守,且对细菌黏附宿主细胞有特异性贡献。此外,这些蛋白预计具有高度抗原性且对病原体存活至关重要。因此,在本研究中,采用免疫信息学方法,利用高度免疫原性的保守T细胞和B细胞表位以及特定连接子、佐剂构建了一种新型疫苗候选物,并对其与人Toll样受体2进行对接建模。此外,还对疫苗的物理化学性质、二级结构、二硫键工程和群体覆盖率分析进行了研究。构建的疫苗在全球人群覆盖率方面显示出良好结果和有前景的免疫反应。为评估疫苗-TLR-2对接复合物的稳定性,进行了分子动力学模拟。构建的疫苗通过C-ImmSim进行了计算机模拟免疫,免疫模拟显著提供了高水平的免疫球蛋白、辅助性T细胞、细胞毒性T细胞和INF-γ。最后,克隆后,将疫苗蛋白逆转录为DNA序列并克隆到pET28a(+)载体中,以确保翻译效力和微生物表达。该研究的总体结果表明,设计的新型嵌合疫苗可同时引发体液免疫和细胞介导免疫反应,是针对该病原体后续体内和体外研究的可靠构建物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26be/8470666/49ea9670ee8f/vaccines-09-01038-g001.jpg

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