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从厌氧猪粪消化液富集培养物中组装的16种反硝化细菌的基因组序列

Sixteen Genome Sequences of Denitrifying Bacteria Assembled from Enriched Cultures of Anaerobic Pig Manure Digestate.

作者信息

Wang Xinhui, Xiang Baoyu, Zhang Menghui, Zhang Xiaojun

机构信息

State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, Shanghai, China.

Joint International Research Laboratory of Metabolic and Developmental Sciences, Shanghai Jiao Tong University, Shanghai, China.

出版信息

Microbiol Resour Announc. 2021 Sep 30;10(39):e0078221. doi: 10.1128/MRA.00782-21.

DOI:10.1128/MRA.00782-21
PMID:34591671
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8483710/
Abstract

We report 16 genomes assembled from the metagenome of pig manure digestate enriched with the addition of NO. These denitrifying bacterial genomes all contain the gene, encoding NO reductase. Their sizes range from 1,902,599 bp to 6,264,563 bp, with completeness of 75.03% to 98.89%, GC contents of 32.86% to 69.66%, and contamination of 0% to 8.4%.

摘要

我们报告了从添加了NO的猪粪消化液宏基因组中组装出的16个基因组。这些反硝化细菌基因组均含有编码NO还原酶的 基因。它们的大小范围从1,902,599 bp到6,264,563 bp,完整性为75.03%至98.89%,GC含量为32.86%至69.66%,污染率为0%至8.4%。

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Environ Microbiol. 2021 Apr;23(4):2244-2259. doi: 10.1111/1462-2920.15404. Epub 2021 Feb 1.
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GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.GTDB-Tk:一个使用基因组分类数据库对基因组进行分类的工具包。
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Nitrogen Cycling in Soybean Rhizosphere: Sources and Sinks of Nitrous Oxide (NO).大豆根际的氮循环:一氧化二氮(N₂O)的来源与汇
Front Microbiol. 2019 Aug 21;10:1943. doi: 10.3389/fmicb.2019.01943. eCollection 2019.
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