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通过DNA条形码解析亚马逊地区的植物多样性。

Unraveling the plant diversity of the Amazonian through DNA barcoding.

作者信息

Vasconcelos Santelmo, Nunes Gisele L, Dias Mariana C, Lorena Jamily, Oliveira Renato R M, Lima Talvâne G L, Pires Eder S, Valadares Rafael B S, Alves Ronnie, Watanabe Maurício T C, Zappi Daniela C, Hiura Alice L, Pastore Mayara, Vasconcelos Liziane V, Mota Nara F O, Viana Pedro L, Gil André S B, Simões André O, Imperatriz-Fonseca Vera L, Harley Raymond M, Giulietti Ana M, Oliveira Guilherme

机构信息

Instituto Tecnológico Vale Belém Brazil.

Programa Interunidades de Pós-Graduação em Bioinformática Universidade Federal de Minas Gerais Belo Horizonte Brazil.

出版信息

Ecol Evol. 2021 Aug 31;11(19):13348-13362. doi: 10.1002/ece3.8057. eCollection 2021 Oct.

Abstract

The of the Serra dos Carajás, in Eastern Amazon, is home to a unique open plant community, harboring several endemic and rare species. Although a complete flora survey has been recently published, scarce to no genetic information is available for most plant species of the ironstone outcrops of the Serra dos Carajás. In this scenario, DNA barcoding appears as a fast and effective approach to assess the genetic diversity of the Serra dos Carajás flora, considering the growing need for robust biodiversity conservation planning in such an area with industrial mining activities. Thus, after testing eight different DNA barcode markers (K, L, B, C1, F-H, K-I, H-A, and ITS2), we chose L and ITS2 as the most suitable markers for a broad application in the regional flora. Here we describe DNA barcodes for 1,130 specimens of 538 species, 323 genera, and 115 families of vascular plants from a highly diverse flora in the Amazon basin, with a total of 344 species being barcoded for the first time. In addition, we assessed the potential of using DNA metabarcoding of bulk samples for surveying plant diversity in the . Upon achieving the first comprehensive DNA barcoding effort directed to a complete flora in the Brazilian Amazon, we discuss the relevance of our results to guide future conservation measures in the Serra dos Carajás.

摘要

位于亚马逊东部的卡拉雅斯山脉拥有独特的开放植物群落,栖息着多种特有和珍稀物种。尽管最近已发表了一份完整的植物志调查,但对于卡拉雅斯山脉铁矿石露头的大多数植物物种,几乎没有可用的遗传信息。在这种情况下,考虑到在这个有工业采矿活动的地区对强有力的生物多样性保护规划的需求不断增加,DNA条形码技术似乎是评估卡拉雅斯山脉植物区系遗传多样性的一种快速有效的方法。因此,在测试了八种不同的DNA条形码标记(K、L、B、C1、F - H、K - I、H - A和ITS2)之后,我们选择L和ITS2作为在区域植物区系中广泛应用的最合适标记。在这里,我们描述了来自亚马逊盆地高度多样化植物区系的538种、323属和115科维管植物的1130个标本的DNA条形码,其中共有344种是首次进行条形码标记。此外,我们评估了使用大量样本的DNA宏条形码技术来调查该地区植物多样性的潜力。在完成了针对巴西亚马逊完整植物区系的首次全面DNA条形码工作后,我们讨论了我们的结果对于指导卡拉雅斯山脉未来保护措施的相关性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/866b/8495817/ff681a2941bf/ECE3-11-13348-g001.jpg

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