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宏基因组学音乐——应用、分析流程及其相关工具的综述。

Music of metagenomics-a review of its applications, analysis pipeline, and associated tools.

机构信息

Department of Electrical Engineering, University of Engineering and Technology, Lahore, Pakistan.

Muhammad Ibn Musa Al-Khwarizmi Research and Development Division, Sabz-Qalam, Lahore, Pakistan.

出版信息

Funct Integr Genomics. 2022 Feb;22(1):3-26. doi: 10.1007/s10142-021-00810-y. Epub 2021 Oct 18.

DOI:10.1007/s10142-021-00810-y
PMID:34657989
Abstract

This humble effort highlights the intricate details of metagenomics in a simple, poetic, and rhythmic way. The paper enforces the significance of the research area, provides details about major analytical methods, examines the taxonomy and assembly of genomes, emphasizes some tools, and concludes by celebrating the richness of the ecosystem populated by the "metagenome."

摘要

本文以简洁、诗意和有节奏的方式突出了宏基因组学的复杂细节。本文强调了该研究领域的重要性，介绍了主要分析方法的细节，考察了基因组的分类和组装，强调了一些工具，并以庆祝由“宏基因组”构成的生态系统的丰富性作为结尾。

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[1]
Music of metagenomics-a review of its applications, analysis pipeline, and associated tools.

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[2]
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[3]
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[4]
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[5]
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[7]
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[8]
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[9]
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[10]
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引用本文的文献

[1]
A review of neural networks for metagenomic binning.

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[2]
aXonica: A support package for MRI based Neuroimaging.

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[3]
The Application of Metagenomics to Study Microbial Communities and Develop Desirable Traits in Fermented Foods.

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[4]
Metagenomics: An Effective Approach for Exploring Microbial Diversity and Functions.

Foods. 2023-5-25

[5]
Decoding the microbial universe with metagenomics: a brief insight.

Front Genet. 2023-4-24

[6]
Detangling the Crosstalk Between and Gut Microbiota: What´s Next?

Front Cell Infect Microbiol. 2022

本文引用的文献

[1]
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes.

Nat Biotechnol. 2020-5-4

[2]
Genomics and metagenomics of colorectal cancer.

J Gastrointest Oncol. 2019-12

[3]
Fast and accurate long-read assembly with wtdbg2.

Nat Methods. 2019-12-9

[4]
DDBJ Database updates and computational infrastructure enhancement.

Nucleic Acids Res. 2020-1-8

[5]
Ensembl 2020.

Nucleic Acids Res. 2020-1-8

[6]
ProteomicsDB: a multi-omics and multi-organism resource for life science research.

Nucleic Acids Res. 2020-1-8

[7]
Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes.

Nat Biotechnol. 2019-7-29

[8]
Decoding microbial community intelligence through metagenomics for efficient wastewater treatment.

Funct Integr Genomics. 2019-5-20

[9]
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline.

Nucleic Acids Res. 2019-7-2

[10]
Assembly of long, error-prone reads using repeat graphs.

Nat Biotechnol. 2019-4-1

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