Department of Biological Sciences, Macquarie University, Sydney, NSW 2019, Australia.
Department of Microbiology, Ohio State University, 318 W. 12th Avenue, Columbus, OH 43210, USA.
FEMS Microbiol Ecol. 2021 Nov 10;97(11). doi: 10.1093/femsec/fiab142.
Quantitative traits such as maximum growth rate and cell radial diameter are one facet of ecological strategy variation across bacteria and archaea. Another facet is substrate-use pathways, such as iron reduction or methylotrophy. Here, we ask how these two facets intersect, using a large compilation of data for culturable species and examining seven quantitative traits (genome size, signal transduction protein count, histidine kinase count, growth temperature, temperature-adjusted maximum growth rate, cell radial diameter and 16S rRNA operon copy number). Overall, quantitative trait variation within groups of organisms possessing a particular substrate-use pathway was very broad, outweighing differences between substrate-use groups. Although some substrate-use groups had significantly different means for some quantitative traits, standard deviation of quantitative trait values within each substrate-use pathway mostly averaged between 1.6 and 1.8 times larger than standard deviation across group means. Most likely, this wide variation reflects ecological strategy: for example, fast maximum growth rate is likely to express an early successional or copiotrophic strategy, and maximum growth varies widely within most substrate-use pathways. In general, it appears that these quantitative traits express different and complementary information about ecological strategy, compared with substrate use.
数量性状,如最大生长率和细胞径向直径,是细菌和古菌生态策略变化的一个方面。另一个方面是底物利用途径,如铁还原或甲基营养。在这里,我们使用可培养物种的大量数据集,检查了七个数量性状(基因组大小、信号转导蛋白计数、组氨酸激酶计数、生长温度、温度调整后的最大生长率、细胞径向直径和 16S rRNA 操纵子拷贝数),来询问这两个方面是如何交叉的。总体而言,具有特定底物利用途径的生物体群体内的数量性状变异非常广泛,超过了底物利用群体之间的差异。尽管一些底物利用群体在某些数量性状上的平均值存在显著差异,但每个底物利用途径内的定量性状值的标准差平均值比群体平均值的标准差大 1.6 到 1.8 倍。很可能,这种广泛的变异反映了生态策略:例如,快速的最大生长率可能表现出早期演替或富营养策略,并且最大生长在大多数底物利用途径内变化很大。一般来说,与底物利用相比,这些定量性状似乎表达了关于生态策略的不同且互补的信息。