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(膜翅目:蚁科)的比较 RNA-Seq 分析揭示了对冷应激的基因反应。

Comparative RNA-Seq Analyses of (Hymenoptera: Formicidae) Reveal Gene in Response to Cold Stress.

机构信息

Plant Quarantine Technology Center, Animal and Plant Quarantine Agency, Gimcheon 39660, Korea.

出版信息

Genes (Basel). 2021 Oct 13;12(10):1610. doi: 10.3390/genes12101610.

DOI:10.3390/genes12101610
PMID:34681004
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8535336/
Abstract

, as a fire ant species, shows some predatory behavior towards earthworms and woodlice, and preys on the larvae of other ant species by tunneling into a neighboring colony's brood chamber. This study focused on the molecular response process and gene expression profiles of to low (9 °C)-temperature stress in comparison with normal temperature (25 °C) conditions. A total of 89,657 unigenes (the clustered non-redundant transcripts that are filtered from the longest assembled contigs) were obtained, of which 32,782 were annotated in the NR (nonredundant protein) database with gene ontology (GO) terms, gene descriptions, and metabolic pathways. The results were 81 GO subgroups and 18 EggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) keywords. Differentially expressed genes (DEGs) with logfold change (FC) > 1 and logFC < -1 with -value ≤ 0.05 were screened for cold stress temperature. We found 215 unigenes up-regulated and 115 unigenes down-regulated. Comparing transcriptome profiles for differential gene expression resulted in various DE proteins and genes, including fatty acid synthases and lipid metabolism, which have previously been reported to be involved in cold resistance. We verified the RNA-seq data by qPCR on 20 up- and down-regulated DEGs. These findings facilitate the basis for the future understanding of the adaptation mechanisms of and the molecular mechanisms underlying the response to low temperatures.

摘要

红火蚁作为一种蚂蚁物种,表现出一些捕食性行为,以蚯蚓和鼠妇为食,并通过挖掘到邻近蚁群的育雏室来捕食其他蚂蚁物种的幼虫。本研究专注于红火蚁对低温(9°C)应激的分子反应过程和基因表达谱与正常温度(25°C)条件相比。共获得 89657 个基因(从最长组装的连续体中过滤出的聚类非冗余转录本),其中 32782 个在 NR(非冗余蛋白)数据库中进行了注释,具有基因本体论(GO)术语、基因描述和代谢途径。结果是 81 个 GO 亚组和 18 个 EggNOG(基因进化:非监督同源群)关键字。筛选出 logfold change (FC) > 1 和 logFC < -1 且 -value ≤ 0.05 的差异表达基因(DEGs)用于低温胁迫温度。我们发现 215 个基因上调,115 个基因下调。比较差异基因表达的转录组图谱,导致各种 DE 蛋白和基因的表达,包括脂肪酸合成酶和脂质代谢,这些基因先前被报道与抗寒有关。我们通过 qPCR 在 20 个上调和下调的 DEGs 上验证了 RNA-seq 数据。这些发现为未来理解红火蚁的适应机制以及对低温的反应的分子机制奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0756/8535336/a236826a5f84/genes-12-01610-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0756/8535336/6dccbe6763d4/genes-12-01610-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0756/8535336/daca1ff5d104/genes-12-01610-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0756/8535336/adf95916060f/genes-12-01610-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0756/8535336/bae136496015/genes-12-01610-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0756/8535336/88fd1fa8f04d/genes-12-01610-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0756/8535336/a236826a5f84/genes-12-01610-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0756/8535336/6dccbe6763d4/genes-12-01610-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0756/8535336/daca1ff5d104/genes-12-01610-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0756/8535336/adf95916060f/genes-12-01610-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0756/8535336/bae136496015/genes-12-01610-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0756/8535336/88fd1fa8f04d/genes-12-01610-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0756/8535336/a236826a5f84/genes-12-01610-g006.jpg

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