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人血管内皮生长因子受体1(VEGFR1)D2结构域热解折叠途径的结构表征

Structural characterization of the thermal unfolding pathway of human VEGFR1 D2 domain.

作者信息

Diana Donatella, Di Stasi Rossella, García-Viñuales Sara, De Rosa Lucia, Isernia Carla, Malgieri Gaetano, Milardi Danilo, D'Andrea Luca D, Fattorusso Roberto

机构信息

Istituto di Biostrutture e Bioimmagini, CNR, Napoli, Italy.

Istituto di Cristallografia, CNR, Catania, Italy.

出版信息

FEBS J. 2022 Mar;289(6):1591-1602. doi: 10.1111/febs.16246. Epub 2021 Nov 18.

DOI:10.1111/febs.16246
PMID:34689403
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9299094/
Abstract

Folding stability is a crucial feature of protein evolution and is essential for protein functions. Thus, the comprehension of protein folding mechanisms represents an important complement to protein structure and function, crucial to determine the structural basis of protein misfolding. In this context, thermal unfolding studies represent a useful tool to get a molecular description of the conformational transitions governing the folding/unfolding equilibrium of a given protein. Here, we report the thermal folding/unfolding pathway of VEGFR1D2, a member of the immunoglobulin superfamily by means of a high-resolution thermodynamic approach that combines differential scanning calorimetry with atomic-level unfolding monitored by NMR. We show how VEGFR1D2 folding is driven by an oxidatively induced disulfide pairing: the key event in the achievement of its functional structure is the formation of a small hydrophobic core that surrounds a disulfide bridge. Such a 'folding nucleus' induces the cooperative transition to the properly folded conformation supporting the hypothesis that a disulfide bond can act as a folding nucleus that eases the folding process.

摘要

折叠稳定性是蛋白质进化的关键特征,对蛋白质功能至关重要。因此,理解蛋白质折叠机制是对蛋白质结构和功能的重要补充,对于确定蛋白质错误折叠的结构基础至关重要。在此背景下,热变性研究是获得给定蛋白质折叠/去折叠平衡的构象转变分子描述的有用工具。在这里,我们通过一种高分辨率热力学方法报告了免疫球蛋白超家族成员VEGFR1D2的热折叠/去折叠途径,该方法将差示扫描量热法与核磁共振监测的原子水平去折叠相结合。我们展示了VEGFR1D2的折叠是如何由氧化诱导的二硫键配对驱动的:实现其功能结构的关键事件是围绕二硫键形成一个小的疏水核心。这样一个“折叠核”诱导向正确折叠构象的协同转变,支持了二硫键可以作为折叠核来促进折叠过程的假设。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad2/9299094/ad6dd7b45dba/FEBS-289-1591-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad2/9299094/6ef3c0a9dafc/FEBS-289-1591-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad2/9299094/45c0d99feb2b/FEBS-289-1591-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad2/9299094/5f6c9909896e/FEBS-289-1591-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad2/9299094/0dd77a0ef274/FEBS-289-1591-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad2/9299094/67ec0ea535f6/FEBS-289-1591-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad2/9299094/ad6dd7b45dba/FEBS-289-1591-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad2/9299094/6ef3c0a9dafc/FEBS-289-1591-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad2/9299094/45c0d99feb2b/FEBS-289-1591-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad2/9299094/5f6c9909896e/FEBS-289-1591-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad2/9299094/0dd77a0ef274/FEBS-289-1591-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad2/9299094/67ec0ea535f6/FEBS-289-1591-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bad2/9299094/ad6dd7b45dba/FEBS-289-1591-g004.jpg

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本文引用的文献

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Substitution of the Native Zn(II) with Cd(II), Co(II) and Ni(II) Changes the Downhill Unfolding Mechanism of Ros87 to a Completely Different Scenario.
用镉(II)、钴(II)和镍(II)取代天然锌(II)会将Ros87的下坡解折叠机制转变为完全不同的情况。
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Structural Zn(II) implies a switch from fully cooperative to partly downhill folding in highly homologous proteins.结构锌(II)意味着在高度同源的蛋白质中,从完全协同折叠到部分下坡折叠的转变。
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