Department of Environmental, Biological and Pharmaceutical Sciences and Technologies, Via Vivaldi 43, 81100, Caserta, Italy.
Institute of Crystallography-CNR, Via Paolo Gaifami 18, 95126, Catania, Italy.
Sci Rep. 2020 Dec 3;10(1):21067. doi: 10.1038/s41598-020-78008-8.
Downhill folding has been defined as a unique thermodynamic process involving a conformations ensemble that progressively loses structure with the decrease of protein stability. Downhill folders are estimated to be rather rare in nature as they miss an energetically substantial folding barrier that can protect against aggregation and proteolysis. We have previously demonstrated that the prokaryotic zinc finger protein Ros87 shows a bipartite folding/unfolding process in which a metal binding intermediate converts to the native structure through a delicate barrier-less downhill transition. Significant variation in folding scenarios can be detected within protein families with high sequence identity and very similar folds and for the same sequence by varying conditions. For this reason, we here show, by means of DSC, CD and NMR, that also in different pH and ionic strength conditions Ros87 retains its partly downhill folding scenario demonstrating that, at least in metallo-proteins, the downhill mechanism can be found under a much wider range of conditions and coupled to other different transitions. We also show that mutations of Ros87 zinc coordination sphere produces a different folding scenario demonstrating that the organization of the metal ion core is determinant in the folding process of this family of proteins.
downhill 折叠已被定义为一种独特的热力学过程,涉及到一个构象 ensemble,随着蛋白质稳定性的降低,构象 ensemble 逐渐失去结构。由于它们错过了一个能量上重要的折叠障碍,该障碍可以防止聚集和蛋白水解,因此在自然界中,downhill 折叠体估计相当罕见。我们之前已经证明,原核锌指蛋白 Ros87 表现出二部分折叠/解折叠过程,其中金属结合中间体通过精细的无阻碍 downhill 转变转化为天然结构。在具有高序列同一性和非常相似的折叠的蛋白质家族中,可以通过改变条件检测到折叠情况的显著变化,对于相同的序列也是如此。出于这个原因,我们通过 DSC、CD 和 NMR 表明,即使在不同的 pH 和离子强度条件下,Ros87 也保持其部分 downhill 折叠情况,表明至少在金属蛋白中,downhill 机制可以在更广泛的条件下找到,并与其他不同的转变相耦合。我们还表明,Ros87 锌配位球的突变产生了不同的折叠情况,表明金属离子核心的组织在该蛋白质家族的折叠过程中是决定性的。