• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

相似文献

1
The change of conditions does not affect Ros87 downhill folding mechanism.条件的变化并不影响 Ros87 下坡折叠机制。
Sci Rep. 2020 Dec 3;10(1):21067. doi: 10.1038/s41598-020-78008-8.
2
Substitution of the Native Zn(II) with Cd(II), Co(II) and Ni(II) Changes the Downhill Unfolding Mechanism of Ros87 to a Completely Different Scenario.用镉(II)、钴(II)和镍(II)取代天然锌(II)会将Ros87的下坡解折叠机制转变为完全不同的情况。
Int J Mol Sci. 2020 Nov 5;21(21):8285. doi: 10.3390/ijms21218285.
3
Structural Zn(II) implies a switch from fully cooperative to partly downhill folding in highly homologous proteins.结构锌(II)意味着在高度同源的蛋白质中,从完全协同折叠到部分下坡折叠的转变。
J Am Chem Soc. 2013 Apr 3;135(13):5220-8. doi: 10.1021/ja4009562. Epub 2013 Mar 26.
4
Thermodynamics of downhill folding: multi-probe analysis of PDD, a protein that folds over a marginal free energy barrier.下坡折叠的热力学:对在微小自由能垒上折叠的蛋白质PDD的多探针分析
J Phys Chem B. 2014 Jul 31;118(30):8982-94. doi: 10.1021/jp504261g. Epub 2014 Jul 21.
5
Deciphering the zinc coordination properties of the prokaryotic zinc finger domain: The solution structure characterization of Ros87 H42A functional mutant.解析原核锌指结构域的锌配位性质:Ros87 H42A 功能突变体的溶液结构特征。
J Inorg Biochem. 2014 Feb;131:30-6. doi: 10.1016/j.jinorgbio.2013.10.016. Epub 2013 Oct 29.
6
One-state downhill versus conventional protein folding.单态下坡与传统蛋白质折叠
J Mol Biol. 2004 Nov 19;344(2):295-301. doi: 10.1016/j.jmb.2004.09.069.
7
The prokaryotic Cys2His2 zinc-finger adopts a novel fold as revealed by the NMR structure of Agrobacterium tumefaciens Ros DNA-binding domain.根癌农杆菌Ros DNA结合结构域的核磁共振结构表明,原核生物的Cys2His2锌指采用了一种新颖的折叠方式。
Proc Natl Acad Sci U S A. 2007 Oct 30;104(44):17341-6. doi: 10.1073/pnas.0706659104. Epub 2007 Oct 23.
8
Downhill versus barrier-limited folding of BBL 3. Heterogeneity of the native state of the BBL peripheral subunit binding domain and its implications for folding mechanisms.BBL 3的下坡折叠与势垒限制折叠。BBL外周亚基结合结构域天然态的异质性及其对折叠机制的影响。
J Mol Biol. 2009 Apr 10;387(4):993-1001. doi: 10.1016/j.jmb.2009.02.014. Epub 2009 Feb 13.
9
Towards understanding the molecular recognition process in prokaryotic zinc-finger domain.迈向对原核生物锌指结构域中分子识别过程的理解。
Eur J Med Chem. 2015 Feb 16;91:100-8. doi: 10.1016/j.ejmech.2014.09.040. Epub 2014 Sep 16.
10
Experimental identification of downhill protein folding.蛋白质折叠下行过程的实验鉴定
Science. 2002 Dec 13;298(5601):2191-5. doi: 10.1126/science.1077809.

引用本文的文献

1
MucR from : New Insights into Its DNA Targets and Its Ability to Oligomerize.MucR 来自:对其 DNA 靶标及其寡聚化能力的新认识。
Int J Mol Sci. 2023 Sep 29;24(19):14702. doi: 10.3390/ijms241914702.
2
The Ros/MucR Zinc-Finger Protein Family in Bacteria: Structure and Functions.细菌中的 Ros/MucR 锌指蛋白家族:结构与功能。
Int J Mol Sci. 2022 Dec 8;23(24):15536. doi: 10.3390/ijms232415536.
3
Copper (I) or (II) Replacement of the Structural Zinc Ion in the Prokaryotic Zinc Finger Ros Does Not Result in a Functional Domain.原核锌指蛋白 Ros 中结构锌离子被铜(I)或(II)取代不会导致功能域。
Int J Mol Sci. 2022 Sep 20;23(19):11010. doi: 10.3390/ijms231911010.
4
Insights into Fluctuations of Structure of Proteins: Significance of Intermediary States in Regulating Biological Functions.蛋白质结构波动的见解:中间状态在调节生物学功能中的意义。
Polymers (Basel). 2022 Apr 11;14(8):1539. doi: 10.3390/polym14081539.
5
Structural characterization of the thermal unfolding pathway of human VEGFR1 D2 domain.人血管内皮生长因子受体1(VEGFR1)D2结构域热解折叠途径的结构表征
FEBS J. 2022 Mar;289(6):1591-1602. doi: 10.1111/febs.16246. Epub 2021 Nov 18.

本文引用的文献

1
Zinc Fingers.锌指结构
Met Ions Life Sci. 2020 Mar 23;20. doi: 10.1515/9783110589757-018.
2
Structural Insight of the Full-Length Ros Protein: A Prototype of the Prokaryotic Zinc-Finger Family.全长 Ros 蛋白的结构解析:原核锌指家族的原型。
Sci Rep. 2020 Jun 9;10(1):9283. doi: 10.1038/s41598-020-66204-5.
3
Metal ions and degenerative diseases.金属离子与退行性疾病
J Biol Inorg Chem. 2019 Dec;24(8):1137-1139. doi: 10.1007/s00775-019-01744-4.
4
Ni(II), Hg(II), and Pb(II) Coordination in the Prokaryotic Zinc-Finger Ros87.原核锌指蛋白 Ros87 中的 Ni(II)、Hg(II) 和 Pb(II) 配位
Inorg Chem. 2019 Jan 22;58(2):1067-1080. doi: 10.1021/acs.inorgchem.8b02201. Epub 2018 Dec 31.
5
Deep clustering of protein folding simulations.蛋白质折叠模拟的深度聚类。
BMC Bioinformatics. 2018 Dec 21;19(Suppl 18):484. doi: 10.1186/s12859-018-2507-5.
6
Identifying the region responsible for Brucella abortus MucR higher-order oligomer formation and examining its role in gene regulation.鉴定布鲁氏菌 abortus MucR 高阶寡聚体形成的区域,并研究其在基因调控中的作用。
Sci Rep. 2018 Nov 22;8(1):17238. doi: 10.1038/s41598-018-35432-1.
7
Folding mechanisms steer the amyloid fibril formation propensity of highly homologous proteins.折叠机制引导高度同源蛋白质的淀粉样原纤维形成倾向。
Chem Sci. 2018 Mar 1;9(13):3290-3298. doi: 10.1039/c8sc00166a. eCollection 2018 Apr 7.
8
Co(II) Coordination in Prokaryotic Zinc Finger Domains as Revealed by UV-Vis Spectroscopy.紫外可见光谱揭示的原核生物锌指结构域中的钴(II)配位
Bioinorg Chem Appl. 2017;2017:1527247. doi: 10.1155/2017/1527247. Epub 2017 Dec 14.
9
The (unusual) aspartic acid in the metal coordination sphere of the prokaryotic zinc finger domain.原核生物锌指结构域金属配位球中的(异常)天冬氨酸。
J Inorg Biochem. 2016 Aug;161:91-8. doi: 10.1016/j.jinorgbio.2016.05.006. Epub 2016 May 11.
10
The prokaryotic zinc-finger: structure, function and comparison with the eukaryotic counterpart.原核锌指结构:结构、功能及与真核对应物的比较。
FEBS J. 2015 Dec;282(23):4480-96. doi: 10.1111/febs.13503. Epub 2015 Oct 6.

条件的变化并不影响 Ros87 下坡折叠机制。

The change of conditions does not affect Ros87 downhill folding mechanism.

机构信息

Department of Environmental, Biological and Pharmaceutical Sciences and Technologies, Via Vivaldi 43, 81100, Caserta, Italy.

Institute of Crystallography-CNR, Via Paolo Gaifami 18, 95126, Catania, Italy.

出版信息

Sci Rep. 2020 Dec 3;10(1):21067. doi: 10.1038/s41598-020-78008-8.

DOI:10.1038/s41598-020-78008-8
PMID:33273582
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7713307/
Abstract

Downhill folding has been defined as a unique thermodynamic process involving a conformations ensemble that progressively loses structure with the decrease of protein stability. Downhill folders are estimated to be rather rare in nature as they miss an energetically substantial folding barrier that can protect against aggregation and proteolysis. We have previously demonstrated that the prokaryotic zinc finger protein Ros87 shows a bipartite folding/unfolding process in which a metal binding intermediate converts to the native structure through a delicate barrier-less downhill transition. Significant variation in folding scenarios can be detected within protein families with high sequence identity and very similar folds and for the same sequence by varying conditions. For this reason, we here show, by means of DSC, CD and NMR, that also in different pH and ionic strength conditions Ros87 retains its partly downhill folding scenario demonstrating that, at least in metallo-proteins, the downhill mechanism can be found under a much wider range of conditions and coupled to other different transitions. We also show that mutations of Ros87 zinc coordination sphere produces a different folding scenario demonstrating that the organization of the metal ion core is determinant in the folding process of this family of proteins.

摘要

downhill 折叠已被定义为一种独特的热力学过程,涉及到一个构象 ensemble,随着蛋白质稳定性的降低,构象 ensemble 逐渐失去结构。由于它们错过了一个能量上重要的折叠障碍,该障碍可以防止聚集和蛋白水解,因此在自然界中,downhill 折叠体估计相当罕见。我们之前已经证明,原核锌指蛋白 Ros87 表现出二部分折叠/解折叠过程,其中金属结合中间体通过精细的无阻碍 downhill 转变转化为天然结构。在具有高序列同一性和非常相似的折叠的蛋白质家族中,可以通过改变条件检测到折叠情况的显著变化,对于相同的序列也是如此。出于这个原因,我们通过 DSC、CD 和 NMR 表明,即使在不同的 pH 和离子强度条件下,Ros87 也保持其部分 downhill 折叠情况,表明至少在金属蛋白中,downhill 机制可以在更广泛的条件下找到,并与其他不同的转变相耦合。我们还表明,Ros87 锌配位球的突变产生了不同的折叠情况,表明金属离子核心的组织在该蛋白质家族的折叠过程中是决定性的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9838/7713307/d4c257c7cea8/41598_2020_78008_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9838/7713307/743b719ca1e7/41598_2020_78008_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9838/7713307/510a9ffdd001/41598_2020_78008_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9838/7713307/56df91f1f692/41598_2020_78008_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9838/7713307/4bef3fb1d182/41598_2020_78008_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9838/7713307/d4c257c7cea8/41598_2020_78008_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9838/7713307/743b719ca1e7/41598_2020_78008_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9838/7713307/510a9ffdd001/41598_2020_78008_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9838/7713307/56df91f1f692/41598_2020_78008_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9838/7713307/4bef3fb1d182/41598_2020_78008_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9838/7713307/d4c257c7cea8/41598_2020_78008_Fig5_HTML.jpg