• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于宏基因组学证据的稳定土壤微生物功能结构对生物多样性丧失的响应

Stable Soil Microbial Functional Structure Responding to Biodiversity Loss Based on Metagenomic Evidences.

作者信息

Chen Huaihai, Ma Kayan, Huang Yu, Yao Zhiyuan, Chu Chengjin

机构信息

State Key Laboratory of Biocontrol, School of Ecology, Sun Yat-sen University, Shenzhen, China.

School of Civil and Environmental Engineering, Ningbo University, Ningbo, China.

出版信息

Front Microbiol. 2021 Oct 7;12:716764. doi: 10.3389/fmicb.2021.716764. eCollection 2021.

DOI:10.3389/fmicb.2021.716764
PMID:34690962
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8529109/
Abstract

Anthropogenic disturbances and global climate change are causing large-scale biodiversity loss and threatening ecosystem functions. However, due to the lack of knowledge on microbial species loss, our understanding on how functional profiles of soil microbes respond to diversity decline is still limited. Here, we evaluated the biotic homogenization of global soil metagenomic data to examine whether microbial functional structure is resilient to significant diversity reduction. Our results showed that although biodiversity loss caused a decrease in taxonomic species by 72%, the changes in the relative abundance of diverse functional categories were limited. The stability of functional structures associated with microbial species richness decline in terrestrial systems suggests a decoupling of taxonomy and function. The changes in functional profile with biodiversity loss were function-specific, with broad-scale metabolism functions decreasing and typical nutrient-cycling functions increasing. Our results imply high levels of microbial physiological versatility in the face of significant biodiversity decline, which, however, does not necessarily mean that a loss in total functional abundance, such as microbial activity, can be overlooked in the background of unprecedented species extinction.

摘要

人为干扰和全球气候变化正在导致大规模的生物多样性丧失,并威胁着生态系统功能。然而,由于对微生物物种丧失缺乏了解,我们对土壤微生物功能谱如何应对多样性下降的认识仍然有限。在此,我们评估了全球土壤宏基因组数据的生物同质化,以检验微生物功能结构对显著的多样性减少是否具有恢复力。我们的结果表明,尽管生物多样性丧失导致分类物种减少了72%,但不同功能类别的相对丰度变化有限。陆地系统中与微生物物种丰富度下降相关的功能结构稳定性表明分类学与功能之间存在解耦。生物多样性丧失时功能谱的变化具有功能特异性,大规模代谢功能减少,而典型的养分循环功能增加。我们的结果表明,面对显著的生物多样性下降,微生物具有高度的生理多功能性,然而,这并不一定意味着在前所未有的物种灭绝背景下,诸如微生物活性等总功能丰度的损失可以被忽视。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ed1/8529109/238850d56070/fmicb-12-716764-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ed1/8529109/740dbe7c2795/fmicb-12-716764-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ed1/8529109/d1e006d48ba5/fmicb-12-716764-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ed1/8529109/a802a341a00b/fmicb-12-716764-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ed1/8529109/43d67f0e65db/fmicb-12-716764-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ed1/8529109/55e1ad57775a/fmicb-12-716764-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ed1/8529109/238850d56070/fmicb-12-716764-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ed1/8529109/740dbe7c2795/fmicb-12-716764-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ed1/8529109/d1e006d48ba5/fmicb-12-716764-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ed1/8529109/a802a341a00b/fmicb-12-716764-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ed1/8529109/43d67f0e65db/fmicb-12-716764-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ed1/8529109/55e1ad57775a/fmicb-12-716764-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ed1/8529109/238850d56070/fmicb-12-716764-g006.jpg

相似文献

1
Stable Soil Microbial Functional Structure Responding to Biodiversity Loss Based on Metagenomic Evidences.基于宏基因组学证据的稳定土壤微生物功能结构对生物多样性丧失的响应
Front Microbiol. 2021 Oct 7;12:716764. doi: 10.3389/fmicb.2021.716764. eCollection 2021.
2
Increasing climate-driven taxonomic homogenization but functional differentiation among river macroinvertebrate assemblages.河流大型无脊椎动物群落的气候驱动分类同质化增加,但功能分化。
Glob Chang Biol. 2020 Dec;26(12):6904-6915. doi: 10.1111/gcb.15389. Epub 2020 Oct 22.
3
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.跨生态系统土壤微生物群落及其功能特性的宏基因组分析。
Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21390-5. doi: 10.1073/pnas.1215210110. Epub 2012 Dec 10.
4
Biodiversity mediates the effects of stressors but not nutrients on litter decomposition.生物多样性调节压力源对凋落物分解的影响,但不调节养分的影响。
Elife. 2020 Jun 26;9:e55659. doi: 10.7554/eLife.55659.
5
Natural revegetation of a semiarid habitat alters taxonomic and functional diversity of soil microbial communities.半干旱生境的自然植被恢复会改变土壤微生物群落的分类和功能多样性。
Sci Total Environ. 2018 Sep 1;635:598-606. doi: 10.1016/j.scitotenv.2018.04.171. Epub 2018 Apr 24.
6
Cascading effects from plants to soil microorganisms explain how plant species richness and simulated climate change affect soil multifunctionality.植物到土壤微生物的级联效应解释了植物物种丰富度和模拟气候变化如何影响土壤多功能性。
Glob Chang Biol. 2018 Dec;24(12):5642-5654. doi: 10.1111/gcb.14440. Epub 2018 Oct 9.
7
Decline of soil microbial diversity does not influence the resistance and resilience of key soil microbial functional groups following a model disturbance.土壤微生物多样性的下降并不影响模拟干扰后关键土壤微生物功能群的抗性和恢复力。
Environ Microbiol. 2007 Sep;9(9):2211-9. doi: 10.1111/j.1462-2920.2007.01335.x.
8
Bacterial Physiological Adaptations to Contrasting Edaphic Conditions Identified Using Landscape Scale Metagenomics.利用景观尺度宏基因组学确定细菌对不同土壤条件的生理适应性
mBio. 2017 Jul 5;8(4):e00799-17. doi: 10.1128/mBio.00799-17.
9
Stability of soil microbial structure and activity depends on microbial diversity.土壤微生物结构和活性的稳定性取决于微生物多样性。
Environ Microbiol Rep. 2014 Apr;6(2):173-83. doi: 10.1111/1758-2229.12126. Epub 2013 Dec 2.
10
Plant diversity does not buffer drought effects on early-stage litter mass loss rates and microbial properties.植物多样性并不会缓冲干旱对早期凋落物质量损失率和微生物特性的影响。
Glob Chang Biol. 2013 Sep;19(9):2795-803. doi: 10.1111/gcb.12225. Epub 2013 May 29.

引用本文的文献

1
Single-cell genomics of single soil aggregates: methodological assessment and potential implications with a focus on nitrogen metabolism.单个土壤团聚体的单细胞基因组学:方法学评估及以氮代谢为重点的潜在影响
Front Microbiol. 2025 Apr 7;16:1557188. doi: 10.3389/fmicb.2025.1557188. eCollection 2025.
2
Soil biodiversity and function under global change.全球变化下的土壤生物多样性与功能
PLoS Biol. 2025 Mar 27;23(3):e3003093. doi: 10.1371/journal.pbio.3003093. eCollection 2025 Mar.
3
Emerging challenges in aquaculture: Current perspectives and human health implications.

本文引用的文献

1
Mycorrhizas and nutrient cycling in ecosystems - a journey towards relevance?菌根与生态系统中的养分循环——迈向相关性的旅程?
New Phytol. 2003 Mar;157(3):475-492. doi: 10.1046/j.1469-8137.2003.00704.x.
2
Directed species loss reduces community productivity in a subtropical forest biodiversity experiment.定向物种丧失降低了亚热带森林生物多样性实验中的群落生产力。
Nat Ecol Evol. 2020 Apr;4(4):550-559. doi: 10.1038/s41559-020-1127-4. Epub 2020 Mar 2.
3
Long-term nutrient inputs shift soil microbial functional profiles of phosphorus cycling in diverse agroecosystems.
水产养殖中的新挑战:当前观点及对人类健康的影响
Vet World. 2025 Jan;18(1):15-28. doi: 10.14202/vetworld.2025.15-28. Epub 2025 Jan 9.
4
Metagenomics unravel distinct taxonomic and functional diversities between terrestrial and aquatic biomes.宏基因组学揭示了陆地和水生生物群落之间不同的分类学和功能多样性。
iScience. 2024 Sep 26;27(10):111047. doi: 10.1016/j.isci.2024.111047. eCollection 2024 Oct 18.
5
Diversity of bacterial communities in wetlands of Calakmul Biosphere Reserve: a comparative analysis between conserved and semi-urbanized zones in pre-Mayan Train era.卡里阿克穆尔生物圈保护区湿地细菌群落多样性:前玛雅火车时代保护区内保护区域和半城市化区域的比较分析。
BMC Microbiol. 2024 Sep 28;24(1):376. doi: 10.1186/s12866-024-03523-x.
6
Long-Term Contaminant Exposure Alters Functional Potential and Species Composition of Soil Bacterial Communities in Gulf Coast Prairies.长期接触污染物会改变墨西哥湾沿岸草原土壤细菌群落的功能潜力和物种组成。
Microorganisms. 2024 Jul 18;12(7):1460. doi: 10.3390/microorganisms12071460.
7
Divergent assembly of soil microbial necromass from microbial and organic fertilizers in forest.森林中微生物肥料和有机肥料对土壤微生物坏死物质的不同组装
Front Microbiol. 2024 Jun 10;15:1291947. doi: 10.3389/fmicb.2024.1291947. eCollection 2024.
8
Bacterial Communities Vary from Different Scleractinian Coral Species and between Bleached and Non-Bleached Corals.不同种类的造礁石珊瑚及其白化和非白化珊瑚的细菌群落存在差异。
Microbiol Spectr. 2023 Jun 15;11(3):e0491022. doi: 10.1128/spectrum.04910-22. Epub 2023 May 16.
9
The reciprocal changes in dominant species with complete metabolic functions explain the decoupling phenomenon of microbial taxonomic and functional composition in a grassland.具有完整代谢功能的优势物种的相互变化解释了草原微生物分类和功能组成的解耦现象。
Front Microbiol. 2023 Mar 16;14:1113157. doi: 10.3389/fmicb.2023.1113157. eCollection 2023.
10
Divergent Changes in Bacterial Functionality as Affected by Root-Zone Ecological Restoration in an Aged Peach Orchard.老龄桃园根区生态修复对细菌功能的不同影响
Microorganisms. 2022 Oct 27;10(11):2127. doi: 10.3390/microorganisms10112127.
长期养分输入改变了不同农业生态系统中磷循环的土壤微生物功能谱。
ISME J. 2020 Mar;14(3):757-770. doi: 10.1038/s41396-019-0567-9. Epub 2019 Dec 11.
4
Redox traits characterize the organization of global microbial communities.氧化还原特性表征了全球微生物群落的组织方式。
Proc Natl Acad Sci U S A. 2019 Feb 26;116(9):3630-3635. doi: 10.1073/pnas.1817554116. Epub 2019 Feb 11.
5
An evolving view of methane metabolism in the Archaea.古菌甲烷代谢的演变观点。
Nat Rev Microbiol. 2019 Apr;17(4):219-232. doi: 10.1038/s41579-018-0136-7. Epub 2019 Jan 21.
6
Genetic correlation network prediction of forest soil microbial functional organization.遗传相关网络预测森林土壤微生物功能组织。
ISME J. 2018 Oct;12(10):2492-2505. doi: 10.1038/s41396-018-0232-8. Epub 2018 Jul 25.
7
Function and functional redundancy in microbial systems.微生物系统中的功能和功能冗余。
Nat Ecol Evol. 2018 Jun;2(6):936-943. doi: 10.1038/s41559-018-0519-1. Epub 2018 Apr 16.
8
Long-term nitrogen fertilization decreases bacterial diversity and favors the growth of Actinobacteria and Proteobacteria in agro-ecosystems across the globe.长期施氮肥会降低农业生态系统中细菌的多样性,并有利于放线菌和变形菌的生长。
Glob Chang Biol. 2018 Aug;24(8):3452-3461. doi: 10.1111/gcb.14163. Epub 2018 Apr 25.
9
High taxonomic variability despite stable functional structure across microbial communities.尽管微生物群落的功能结构稳定,但分类学变异性很高。
Nat Ecol Evol. 2016 Dec 5;1(1):15. doi: 10.1038/s41559-016-0015.
10
The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils.活跃的微生物多样性驱动着生态系统多功能性,并且在生理上与地中海半干旱土壤中的碳有效性相关。
Mol Ecol. 2016 Sep;25(18):4660-73. doi: 10.1111/mec.13783. Epub 2016 Aug 26.