• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

来自印度洋查戈斯群岛的三种造礁珊瑚(鹿角珊瑚科,石珊瑚目)的完整线粒体基因组

Complete mitochondrial genomes of three reef forming corals (Acroporidae, Scleractinia) from Chagos Archipelago, Indian Ocean.

作者信息

Colin Luigi, Yesson Chris, Head Catherine E I

机构信息

Institute of Zoology, Zoological Society of London, Regent's Park, NW1 4RY, London, United Kingdom Institute of Zoology, Zoological Society of London, Regent's Park, NW1 4RY London United Kingdom.

Department of Zoology, University of Oxford, John Krebs Field Station, Wytham, OX2 8JQ, Oxford, United Kingdom Department of Zoology, University of Oxford, John Krebs Field Station, Wytham, OX2 8JQ Oxford United Kingdom.

出版信息

Biodivers Data J. 2021 Sep 30;9:e72762. doi: 10.3897/BDJ.9.e72762. eCollection 2021.

DOI:10.3897/BDJ.9.e72762
PMID:34707458
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8497460/
Abstract

We present the first mitochondrial genomes from Chagos Archipelago, Indian Ocean, of three putative species of reef forming Acropora (Acropora aff. tenuis, Acropora aff.cytherea and Acropora aff. orbicularis). The circular genome consists respectively of 18,334 bp, 18,353 bp and 18,584 bp. All mitochondrial genomes recovered comprise 13 protein-coding genes, two transfer RNA genes and two ribosomal RNA genes, with an overall GC content ranging from 37.9% to 38.0%. These new genomic data contribute to our increased understanding of genus and its species boundaries, ultimately aiding species monitoring and conservation efforts.

摘要

我们展示了来自印度洋查戈斯群岛的三种疑似造礁鹿角珊瑚(细枝鹿角珊瑚近似种、赛氏鹿角珊瑚近似种和扁脑珊瑚近似种)的首个线粒体基因组。环状基因组分别由18,334个碱基对、18,353个碱基对和18,584个碱基对组成。所有恢复的线粒体基因组均包含13个蛋白质编码基因、两个转运RNA基因和两个核糖体RNA基因,总体GC含量在37.9%至38.0%之间。这些新的基因组数据有助于我们加深对该属及其物种界限的理解,最终有助于物种监测和保护工作。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bfa6/8497460/2f50f15285c9/bdj-09-e72762-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bfa6/8497460/71470d4e834c/bdj-09-e72762-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bfa6/8497460/2f50f15285c9/bdj-09-e72762-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bfa6/8497460/71470d4e834c/bdj-09-e72762-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bfa6/8497460/2f50f15285c9/bdj-09-e72762-g002.jpg

相似文献

1
Complete mitochondrial genomes of three reef forming corals (Acroporidae, Scleractinia) from Chagos Archipelago, Indian Ocean.来自印度洋查戈斯群岛的三种造礁珊瑚(鹿角珊瑚科,石珊瑚目)的完整线粒体基因组
Biodivers Data J. 2021 Sep 30;9:e72762. doi: 10.3897/BDJ.9.e72762. eCollection 2021.
2
Diversity and distribution of symbiodinium associated with seven common coral species in the Chagos Archipelago, central Indian Ocean.与印度洋中部查戈斯群岛七种常见珊瑚共生的共生藻多样性和分布。
PLoS One. 2012;7(5):e35836. doi: 10.1371/journal.pone.0035836. Epub 2012 May 2.
3
The complete mitochondrial genome of Acropora aculeus (cnidaria, scleractinia, acroporidae).尖锐鹿角珊瑚(刺胞动物门,石珊瑚目,鹿角珊瑚科)的完整线粒体基因组。
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):4276-4277. doi: 10.3109/19401736.2015.1082092. Epub 2015 Sep 24.
4
The complete mitochondrial genome of (Scleractinia, Acroporidae).(石珊瑚目,鹿角珊瑚科)的完整线粒体基因组。
Mitochondrial DNA B Resour. 2017 Jan 31;2(1):62-63. doi: 10.1080/23802359.2016.1186508.
5
Complete mitochondrial genome of the whitetip reef shark from the British Indian Ocean Territory Marine Protected Area.来自英属印度洋领地海洋保护区的白鳍礁鲨的完整线粒体基因组。
Mitochondrial DNA B Resour. 2020 Jun 5;5(3):2347-2349. doi: 10.1080/23802359.2020.1775148.
6
Background mortality rates for recovering populations of Acropora cytherea in the Chagos Archipelago, central Indian Ocean.印度洋中部查戈斯群岛中恢复的 Acropora cytherea 种群的背景死亡率。
Mar Environ Res. 2013 May;86:29-34. doi: 10.1016/j.marenvres.2013.02.007. Epub 2013 Feb 26.
7
Consolidated Checklist of Hard Corals of the Genus Oken, 1815 (Scleractinia: Acroporidae) in North Borneo, East Malaysia.1815年奥肯属(石珊瑚目:鹿角珊瑚科)硬珊瑚在马来西亚东部北婆罗洲的综合清单
Zootaxa. 2016 Nov 29;4200(2):zootaxa.4200.2.2. doi: 10.11646/zootaxa.4200.2.2.
8
Mitochondrial genome of the Silvertip shark, from the British Indian Ocean Territory.来自英属印度洋领地的银鳍鲨线粒体基因组。
Mitochondrial DNA B Resour. 2020 May 14;5(3):2085-2086. doi: 10.1080/23802359.2020.1765210.
9
Revision of the coral genus (Scleractinia: Astrocoeniina: Acroporidae) in Indonesia.印度尼西亚鹿角珊瑚属(石珊瑚目:星孔珊瑚亚目:鹿角珊瑚科)的修订
Zool J Linn Soc. 1998 Jul;123(3):199-384. doi: 10.1111/j.1096-3642.1998.tb01302.x. Epub 2008 Jun 28.
10
Evolutionary biogeography of the reef-building coral genus Galaxea across the Indo-Pacific ocean.造礁石珊瑚属 Galaxea 跨印度-太平洋的进化生物地理学。
Mol Phylogenet Evol. 2020 Oct;151:106905. doi: 10.1016/j.ympev.2020.106905. Epub 2020 Jul 9.

引用本文的文献

1
Whole genome assembly and annotation of the endangered Caribbean coral Acropora cervicornis.濒危加勒比珊瑚 Acropora cervicornis 的全基因组组装和注释。
G3 (Bethesda). 2023 Dec 6;13(12). doi: 10.1093/g3journal/jkad232.
2
The Complete Mitochondrial Genome of (Scleractinia, Lobophylliidae): The First Sequence for the Genus Homophyllia.(珊瑚纲,石珊瑚目,石芝珊瑚科)的完整线粒体基因组:Homophyllia 属的首个序列。
Genes (Basel). 2023 Mar 11;14(3):695. doi: 10.3390/genes14030695.
3
The complete mitochondrial genome of (Scleractinia, Acroporidae).

本文引用的文献

1
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation.交互式生命树 (iTOL) v5:一个用于显示和注释系统发育树的在线工具。
Nucleic Acids Res. 2021 Jul 2;49(W1):W293-W296. doi: 10.1093/nar/gkab301.
2
The complete mitochondrial genome of (Cnidaria: Scleractinia) obtained using next-generation sequencing.利用下一代测序技术获得的(刺胞动物门:石珊瑚目)的完整线粒体基因组。
Mitochondrial DNA B Resour. 2018 Feb 24;3(1):286-287. doi: 10.1080/23802359.2018.1443852.
3
Using ezRAD to reconstruct the complete mitochondrial genome of (Cnidaria: Scleractinia).
(石珊瑚目,鹿角珊瑚科)的完整线粒体基因组。
Biodivers Data J. 2022 Sep 13;10:e91531. doi: 10.3897/BDJ.10.e91531. eCollection 2022.
使用ezRAD技术重建(刺胞动物门:石珊瑚目)的完整线粒体基因组。
Mitochondrial DNA B Resour. 2018 Feb 9;3(1):173-174. doi: 10.1080/23802359.2018.1437805.
4
NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy.NanoGalaxy:Galaxy 中的纳米孔长读测序数据分析。
Gigascience. 2020 Oct 17;9(10). doi: 10.1093/gigascience/giaa105.
5
An enhanced target-enrichment bait set for Hexacorallia provides phylogenomic resolution of the staghorn corals (Acroporidae) and close relatives.一套改良的六放珊瑚目标富集探针对,提供了鹿角珊瑚(Acroporidae)及其近缘物种的系统基因组分辨率。
Mol Phylogenet Evol. 2020 Dec;153:106944. doi: 10.1016/j.ympev.2020.106944. Epub 2020 Aug 27.
6
Characterization of the complete mitochondrial genome sequences of three Merulinidae corals and novel insights into the phylogenetics.三种裸肋珊瑚科珊瑚完整线粒体基因组序列的特征分析及系统发育学新见解
PeerJ. 2020 Jan 24;8:e8455. doi: 10.7717/peerj.8455. eCollection 2020.
7
Versatile genome assembly evaluation with QUAST-LG.QUAST-LG 进行多功能基因组组装评估。
Bioinformatics. 2018 Jul 1;34(13):i142-i150. doi: 10.1093/bioinformatics/bty266.
8
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.Galaxy 平台:用于可访问、可重复和协作的生物医学分析:2018 年更新。
Nucleic Acids Res. 2018 Jul 2;46(W1):W537-W544. doi: 10.1093/nar/gky379.
9
Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long-standing problems.用于珊瑚虫(刺胞动物门)系统基因组学的通用靶向富集探针:解决长期存在问题的新方法。
Mol Ecol Resour. 2018 Mar;18(2):281-295. doi: 10.1111/1755-0998.12736. Epub 2017 Dec 6.
10
ModelFinder: fast model selection for accurate phylogenetic estimates.ModelFinder:用于准确系统发育估计的快速模型选择
Nat Methods. 2017 Jun;14(6):587-589. doi: 10.1038/nmeth.4285. Epub 2017 May 8.