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三种裸肋珊瑚科珊瑚完整线粒体基因组序列的特征分析及系统发育学新见解

Characterization of the complete mitochondrial genome sequences of three Merulinidae corals and novel insights into the phylogenetics.

作者信息

Niu Wentao, Xiao Jiaguang, Tian Peng, Yu Shuangen, Guo Feng, Wang Jianjia, Huang Dingyong

机构信息

Laboratory of Marine Biology and Ecology, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, Fujian, China.

出版信息

PeerJ. 2020 Jan 24;8:e8455. doi: 10.7717/peerj.8455. eCollection 2020.

Abstract

Over the past few decades, modern coral taxonomy, combining morphology and molecular sequence data, has resolved many long-standing questions about scleractinian corals. In this study, we sequenced the complete mitochondrial genomes of three Merulinidae corals (, , and ) for the first time using next-generation sequencing. The obtained mitogenome sequences ranged from 16,466 bp () to 18,006 bp () in length, and included 13 unique protein-coding genes (PCGs), two transfer RNA genes, and two ribosomal RNA genes . Gene arrangement, nucleotide composition, and nucleotide bias of the three Merulinidae corals were canonically identical to each other and consistent with other scleractinian corals. We performed a Bayesian phylogenetic reconstruction based on 13 protein-coding sequences of 86 Scleractinia species. The results showed that the family Merulinidae was conventionally nested within the robust branch, with clustered closely with and clustered closely with . This study provides novel insight into the phylogenetics of species within the family Merulinidae and the evolutionary relationships among different Scleractinia genera.

摘要

在过去几十年中,结合形态学和分子序列数据的现代珊瑚分类学解决了许多关于石珊瑚的长期存在的问题。在本研究中,我们首次使用下一代测序技术对三种裸肋珊瑚(、和)的完整线粒体基因组进行了测序。获得的线粒体基因组序列长度从16,466 bp()到18,006 bp()不等,包括13个独特的蛋白质编码基因(PCGs)、两个转运RNA基因和两个核糖体RNA基因。这三种裸肋珊瑚的基因排列、核苷酸组成和核苷酸偏向彼此典型地相同,并且与其他石珊瑚一致。我们基于86种石珊瑚的13个蛋白质编码序列进行了贝叶斯系统发育重建。结果表明,裸肋珊瑚科传统上嵌套在稳健分支内,与紧密聚类,与紧密聚类。本研究为裸肋珊瑚科内物种的系统发育以及不同石珊瑚属之间的进化关系提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b83/6984341/c6f18a3370c4/peerj-08-8455-g001.jpg

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