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中国北方五个少数民族骨骼肌力量相关基因的群体遗传多态性

Population Genetic Polymorphism of Skeletal Muscle Strength Related Genes in Five Ethnic Minorities in North China.

作者信息

Dong Bonan, Li Qiuyan, Zhang Tingting, Liang Xiao, Jia Mansha, Fu Yansong, Bai Jing, Fu Songbin

机构信息

Laboratory of Medical Genetics, Harbin Medical University, Harbin, China.

Key Laboratory of Preservation of Human Genetic Resources and Disease Control in China (Harbin Medical University), Ministry of Education, Harbin, China.

出版信息

Front Genet. 2021 Oct 11;12:756802. doi: 10.3389/fgene.2021.756802. eCollection 2021.

Abstract

Musculoskeletal performance is a complex trait influenced by environmental and genetic factors, and it has different manifestations in different populations. Heilongjiang province, located in northern China, is a multi-ethnic region with human cultures dating back to the Paleolithic Age. The Daur, Hezhen, Ewenki, Mongolian and Manchu ethnic groups in Heilongjiang province may have strong physical fitness to a certain extent. Based on the genetic characteristics of significant correlation between some important genes and skeletal muscle function, this study selected 23 SNPs of skeletal muscle strength-related genes and analyzed the distribution of these loci and genetic diversity in the five ethnic groups. Use Haploview (version 4.1) software to calculate the chi-square and the Hardy-Weinberg equilibrium to assess the difference between the two ethnic groups. Use R (version 4.0.2) software to perform principal component analysis of different ethnic groups. Use MEGA (version 7.0) software to construct the phylogenetic tree of different ethnic groups. Use POPGENE (version 1.32) software to calculate the heterozygosity and the F values of 23 SNPs. Use Arlequin (version 3.5.2.2) software to analyze molecular variance (AMOVA) among 31 populations. The results showed that there was haplotype diversity of , , , and genes in the five ethnic groups, and there were genetic differences in the distribution of these genes in the five ethnic groups. Among them, the average gene heterozygosity (AVE_HET) of the 23 SNPs in the five populations was 0.398. The F values of the 23 SNPs among the five ethnic groups varied from 0.0011 to 0.0137. According to the principal component analysis, the genetic distance of Daur, Mongolian and Ewenki is relatively close. According to the phylogenetic tree, the five ethnic groups are clustered together with the Asian population. These data will enrich existing genetic information of ethnic minorities.

摘要

肌肉骨骼性能是一种受环境和遗传因素影响的复杂性状,在不同人群中有不同表现。黑龙江省位于中国北部,是一个多民族地区,人类文化可追溯到旧石器时代。黑龙江省的达斡尔族、赫哲族、鄂温克族、蒙古族和满族在一定程度上可能具有较强的身体素质。基于一些重要基因与骨骼肌功能显著相关的遗传特征,本研究选取了23个骨骼肌力量相关基因的单核苷酸多态性(SNP),分析了这5个民族中这些位点的分布及遗传多样性。使用Haploview(4.1版)软件计算卡方值和哈迪 - 温伯格平衡,以评估两个民族之间的差异。使用R(4.0.2版)软件对不同民族进行主成分分析。使用MEGA(7.0版)软件构建不同民族的系统发育树。使用POPGENE(1.32版)软件计算23个SNP的杂合度和F值。使用Arlequin(3.5.2.2版)软件分析31个群体间的分子方差分析(AMOVA)。结果表明,这5个民族中 、 、 、 和 基因存在单倍型多样性,且这5个民族中这些基因的分布存在遗传差异。其中,这5个群体中23个SNP的平均基因杂合度(AVE_HET)为0.398。这5个民族中23个SNP的F值在0.0011至0.0137之间。根据主成分分析,达斡尔族、蒙古族和鄂温克族的遗传距离相对较近。根据系统发育树,这5个民族与亚洲人群聚类在一起。这些数据将丰富现有的少数民族遗传信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/213b/8564566/b7c2008ac819/fgene-12-756802-g001.jpg

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