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用于预测肺鳞状细胞癌患者预后的E2F相关基因特征的开发与验证

Development and Validation of an E2F-Related Gene Signature to Predict Prognosis of Patients With Lung Squamous Cell Carcinoma.

作者信息

Wang Cailian, Gu Xuyu, Zhang Xiuxiu, Zhou Min, Chen Yan

机构信息

Department of Oncology, Zhongda Hospital, School of Medicine, Southeast University, Nanjing, China.

School of Medicine, Southeast University, Nanjing, China.

出版信息

Front Oncol. 2021 Oct 22;11:756096. doi: 10.3389/fonc.2021.756096. eCollection 2021.

Abstract

BACKGROUND

Lung squamous cell carcinoma (LUSC) generally correlates with poor clinical prognoses due to the lack of available prognostic biomarkers. This study is designed to identify a potential biomarker significant for the prognosis and treatment of LUSC, so as to provide a scientific basis for clinical treatment decisions.

METHODS

Genomic changes in LUSC samples before and after radiation were firstly discussed to identify E2 factor (E2F) pathway of prognostic significance. A series of bioinformatics analyses and statistical methods were combined to construct a robust E2F-related prognostic gene signature. Furthermore, a decision tree and a nomogram were established according to the gene signature and multiple clinicopathological characteristics to improve risk stratification and quantify risk assessment for individual patients.

RESULTS

In our investigated cohorts, the E2F-related gene signature we identified was capable of predicting clinical outcomes and therapeutic responses in LUSC patients, besides, discriminative to identify high-risk patients. Survival analysis suggested that the gene signature was independently prognostic for adverse overall survival of LUSC patients. The decision tree identified the strong discriminative performance of the gene signature in risk stractification for overall survival while the nomogram demonstrated a high accuracy.

CONCLUSION

The E2F-related gene signature may help distinguish high-risk patients so as to formulate personalized treatment strategy in LUSC patients.

摘要

背景

由于缺乏可用的预后生物标志物,肺鳞状细胞癌(LUSC)通常与不良临床预后相关。本研究旨在鉴定对LUSC的预后和治疗具有重要意义的潜在生物标志物,为临床治疗决策提供科学依据。

方法

首先探讨LUSC样本放疗前后的基因组变化,以确定具有预后意义的E2因子(E2F)途径。结合一系列生物信息学分析和统计方法,构建一个稳健的E2F相关预后基因特征。此外,根据基因特征和多个临床病理特征建立决策树和列线图,以改善风险分层并量化个体患者的风险评估。

结果

在我们研究的队列中,我们鉴定出的E2F相关基因特征能够预测LUSC患者的临床结局和治疗反应,此外,还能鉴别高危患者。生存分析表明,该基因特征是LUSC患者不良总生存的独立预后因素。决策树确定了该基因特征在总生存风险分层中的强大鉴别性能,而列线图显示出高准确性。

结论

E2F相关基因特征可能有助于区分高危患者,从而为LUSC患者制定个性化治疗策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3999/8569707/19b792557f34/fonc-11-756096-g001.jpg

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