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解释秀丽隐杆线虫 N2 寿命实验室内差异:提倡标准化报告以提高可重复性。

Explaining inter-lab variance in C. elegans N2 lifespan: Making a case for standardized reporting to enhance reproducibility.

机构信息

Department of Molecular & Integrative Physiology, University of Michigan, Ann Arbor, MI 48109, USA.

Undergraduate Research Opportunity Program, University of Michigan, Ann Arbor, MI 48109, USA.

出版信息

Exp Gerontol. 2021 Dec;156:111622. doi: 10.1016/j.exger.2021.111622. Epub 2021 Nov 15.

Abstract

The nematode Caenorhabditis elegans is a powerful model organism for studying cell development, apoptosis, neuronal circuits, and aging. The isolate N2 is recognized by the C. elegans community as the reference wild-type strain. Interestingly, the lifespan of presumably isogenic C. elegans N2 worms-even when grown under comparable conditions-varies significantly amongst distinct laboratories. This hinders the inter-laboratory comparability of C. elegans lifespan data and raises questions regarding data interpretation and reproducibility. Here, we hypothesized slight alterations in experimental design and worm handling could explain the observed discrepancies. To test this hypothesis, we collected and assessed data from over 1000 published C. elegans N2 lifespan assays as well as corresponding methodological meta-data. We find that mean N2 lifespans range from approximately 7 days to upwards of 35 days, despite laboratories disclosing seemingly comparable experimental conditions. We further demonstrate that, in addition to temperature, the use of the chemical sterilizer 5-fluoro-2'-deoxyuridine (FUDR) may change N2 lifespan. Additionally, we observed differences in average N2 lifespan from experiments originating from distinct geographic locations, indicating a potential effect of location-specific factors on experimental outcomes. Taken as a whole, our work indicates the sum of many small, rather than a few critical, differences in experimental conditions may account for the observed variance in N2 lifespan. We also find that the absence of standardized experimental methods and the insufficient disclosure of experiment details in the peer-reviewed literature limits the inter-lab comparability of published results. We thus propose the establishment of a succinct reporting standard for C. elegans lifespan experiments to increase the reliability and reproducibility, and thus scientific value, of these studies.

摘要

秀丽隐杆线虫是一种强大的模式生物,可用于研究细胞发育、细胞凋亡、神经元回路和衰老。N2 株被秀丽隐杆线虫研究界公认为参考野生型菌株。有趣的是,即使在相似的条件下生长,不同实验室的假定同基因秀丽隐杆线虫 N2 蠕虫的寿命差异显著。这阻碍了秀丽隐杆线虫寿命数据的实验室间可比性,并引发了关于数据解释和可重复性的问题。在这里,我们假设实验设计和线虫处理的微小变化可以解释观察到的差异。为了验证这一假设,我们收集并评估了来自 1000 多项已发表的秀丽隐杆线虫 N2 寿命测定以及相应的方法学元数据。我们发现,尽管实验室披露的实验条件似乎相似,但 N2 的平均寿命范围从大约 7 天到 35 天以上。我们进一步证明,除了温度之外,化学消毒剂 5-氟-2'-脱氧尿苷 (FUDR) 的使用也可能改变 N2 的寿命。此外,我们观察到来自不同地理位置的实验中平均 N2 寿命存在差异,这表明特定地理位置的因素可能对实验结果产生影响。总的来说,我们的工作表明,实验条件中的许多微小差异而不是少数关键差异可能导致 N2 寿命的观察到的差异。我们还发现,缺乏标准化的实验方法和同行评议文献中实验细节披露不足限制了已发表结果的实验室间可比性。因此,我们建议为秀丽隐杆线虫寿命实验建立一个简洁的报告标准,以提高这些研究的可靠性和可重复性,从而提高其科学价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1d6/8938996/3dece81f8cf4/nihms-1759780-f0001.jpg

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