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胃高级别上皮内瘤变患者血浆外泌体中的长链非编码RNA谱

Long non-coding RNA profiles in plasma exosomes of patients with gastric high-grade intraepithelial neoplasia.

作者信息

Hu Feng, Rao Min, Zhang Manli, Meng Qingqing, Wan Minjie, Zhang Xiuna, Ding Lili, Jiang Yanfang

机构信息

Department of Hepatology and Gastroenterology, The Second Part of First Hospital of Jilin University, Changchun, Jilin 130000, P.R. China.

Central Laboratory, The First Hospital of Jilin University, Changchun, Jilin 130000, P.R. China.

出版信息

Exp Ther Med. 2022 Jan;23(1):1. doi: 10.3892/etm.2021.10923. Epub 2021 Oct 26.

Abstract

Long non-coding (lnc) RNAs in circulating exosomes are a new class of promising cancer biomarkers; however, their expression in exosomes derived from gastric high-grade intraepithelial neoplasia (GHGIN) has not been reported. In the present study, differentially expressed (DE) lncRNAs were analyzed in the peripheral blood collected from 5 patients with GHGIN and 5 healthy donors using high-throughput sequencing. Reverse transcription-quantitative PCR analysis was performed on 6 randomly selected DE lncRNAs to validate the reliability of the sequencing results. The potential roles of the DE lncRNAs in GHGIN were investigated using Gene Ontology (GO) and Kyoto Encyclopedia of Gene and Genome (KEGG) pathway enrichment analyses. A total of 25,145 lncRNAs were identified in all the samples and 83 DE lncRNAs were further screened, including 76 upregulated and 7 downregulated DE lncRNAs. GO and KEGG analyses predicted that the DE lncRNAs played notable roles in 'protein/macromolecule glycosylation', 'regulation of protein ubiquitination', 'renin-angiotensin system' and 'MAPK signaling pathways'. A lncRNA-micro (mi)RNA-mRNA interaction network was constructed and used to perform association analyses. It was found that 83 lncRNAs were abnormally expressed in GHGIN, with some potential functions associated with gastric cancer. Furthermore, the lncRNA-miRNA-mRNA interaction network indicated that 7 DE lncRNAs may play a notable role in the occurrence and development of GHGIN. The results of the present study showed the expression profiles of lncRNAs in human GHGIN, elucidated some of the molecular changes associated with GHGIN and improved the understanding of the molecular mechanisms underlying GHGIN and gastric cancer.

摘要

循环外泌体中的长链非编码(lnc)RNA是一类新的有前景的癌症生物标志物;然而,它们在胃高级别上皮内瘤变(GHGIN)来源的外泌体中的表达尚未见报道。在本研究中,使用高通量测序分析了5例GHGIN患者和5名健康供体外周血中差异表达(DE)的lncRNA。对随机选择的6个DE lncRNA进行逆转录定量PCR分析,以验证测序结果的可靠性。使用基因本体论(GO)和京都基因与基因组百科全书(KEGG)通路富集分析研究了DE lncRNA在GHGIN中的潜在作用。在所有样本中共鉴定出25,145个lncRNA,并进一步筛选出83个DE lncRNA,包括76个上调和7个下调的DE lncRNA。GO和KEGG分析预测,DE lncRNA在“蛋白质/大分子糖基化”、“蛋白质泛素化调节”、“肾素-血管紧张素系统”和“MAPK信号通路”中发挥显著作用。构建了lncRNA-微小(mi)RNA-mRNA相互作用网络并用于进行关联分析。发现83个lncRNA在GHGIN中异常表达,具有一些与胃癌相关的潜在功能。此外,lncRNA-miRNA-mRNA相互作用网络表明7个DE lncRNA可能在GHGIN的发生发展中发挥显著作用。本研究结果显示了lncRNA在人类GHGIN中的表达谱,阐明了一些与GHGIN相关的分子变化,并增进了对GHGIN和胃癌潜在分子机制的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5314/8593877/294530d01cdf/etm-23-01-10923-g00.jpg

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