Yang Peipei, Chen Wanrong, Xu Hua, Yang Junhan, Jiang Jinghang, Jiang Yunhui, Xu Ganglin
Department of Dermatology, Jingmen No. 2 People's Hospital, No. 39 Xiangshan Road Dongbao Zone, Jingmen, 448000, Hubei, China.
Graduate School, Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region, China.
Cancer Cell Int. 2021 Nov 29;21(1):635. doi: 10.1186/s12935-021-02350-8.
The tumor microenvironment (TME) is critical in the progression and metastasis of skin cutaneous melanoma (SKCM). Differences in tumor-infiltrating immune cells (TICs) and their gene expression have been linked to cancer prognosis. Given that immunotherapy can be effective against SKCM, we aimed to identify key genes that regulate the immunological state of the TME in SKCM.
Data from 471 SKCM patients in the The Cancer Genome Atlas were analyzed using ESTIMATE algorithms to generate an ImmuneScore, StromalScore, and EstimateScore for each patient. Patients were classified into low- or high-score groups based on median values, then compared in order to identify differentially expressed genes (DEGs). Then a protein-protein interaction (PPI) network was developed, and a prognostic model was created using uni- and multivariate Cox regression as well as the least absolute shrinkage and selection operator (LASSO). Key DEGs were identified using the web-based tool GEPIA. Profiles of TIC subpopulations in each patient were analyzed using CIBORSORT, and possible correlations between key DEG expression and TICs were explored. Levels of CCL8 were determined in SKCM and normal skin tissue using immunohistochemistry.
Two scores correlated positively with the prognosis of SKCM patients. Comparison of the low- and high-score groups revealed 1684 up-regulated and 18 down-regulated DEGs, all of which were enriched in immune-related functions. The prognostic model identified CCL8 as a key gene, which CIBERSORT found to correlate with M1 macrophages. Immunohistochemistry revealed strong expression in SKCM tissue, but failed to detect the protein in normal skin tissue.
CCL8 is a potential prognostic marker for SKCM, and it may become an effective target for melanoma in which M1 macrophages play an important role.
肿瘤微环境(TME)在皮肤黑色素瘤(SKCM)的进展和转移中至关重要。肿瘤浸润免疫细胞(TICs)的差异及其基因表达与癌症预后相关。鉴于免疫疗法对SKCM可能有效,我们旨在鉴定调节SKCM中TME免疫状态的关键基因。
使用ESTIMATE算法分析来自癌症基因组图谱中471例SKCM患者的数据,为每位患者生成免疫评分、基质评分和估计评分。根据中位数将患者分为低分或高分两组,然后进行比较以鉴定差异表达基因(DEGs)。接着构建蛋白质-蛋白质相互作用(PPI)网络,并使用单变量和多变量Cox回归以及最小绝对收缩和选择算子(LASSO)创建预后模型。使用基于网络的工具GEPIA鉴定关键DEGs。使用CIBORSORT分析每位患者中TIC亚群的概况,并探索关键DEG表达与TICs之间可能的相关性。使用免疫组织化学测定SKCM和正常皮肤组织中CCL8的水平。
两个评分与SKCM患者的预后呈正相关。低分和高分两组的比较显示1684个上调和18个下调的DEGs,所有这些基因均富集于免疫相关功能。预后模型将CCL8鉴定为关键基因,CIBERSORT发现其与M1巨噬细胞相关。免疫组织化学显示在SKCM组织中表达强烈,但在正常皮肤组织中未检测到该蛋白。
CCL8是SKCM的潜在预后标志物,并且它可能成为M1巨噬细胞起重要作用的黑色素瘤的有效靶点。