Tie Cheng-Wei, Dong Xin, Zhu Ji-Qing, Wang Kai, Liu Xu-Dong, Liu Yu-Meng, Wang Gui-Qi, Zhang Ye, Ni Xiao-Guang
Department of Endoscopy, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
Department of Clinical Laboratory, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
Eur J Radiol Open. 2024 Apr 20;12:100563. doi: 10.1016/j.ejro.2024.100563. eCollection 2024 Jun.
This study aims to assess the efficacy of narrow band imaging (NBI) endoscopy in utilizing radiomics for predicting radiosensitivity in nasopharyngeal carcinoma (NPC), and to explore the associated molecular mechanisms.
The study included 57 NPC patients who were pathologically diagnosed and underwent RNA sequencing. They were categorized into complete response (CR) and partial response (PR) groups after receiving radical concurrent chemoradiotherapy. We analyzed 267 NBI images using ResNet50 for feature extraction, obtaining 2048 radiomic features per image. Using Python for deep learning and least absolute shrinkage and selection operator for feature selection, we identified differentially expressed genes associated with radiomic features. Subsequently, we conducted enrichment analysis on these genes and validated their roles in the tumor immune microenvironment through single-cell RNA sequencing.
After feature selection, 54 radiomic features were obtained. The machine learning algorithm constructed from these features showed that the random forest algorithm had the highest average accuracy rate of 0.909 and an area under the curve of 0.961. Correlation analysis identified 30 differential genes most closely associated with the radiomic features. Enrichment and immune infiltration analysis indicated that tumor-associated macrophages are closely related to treatment responses. Three key NBI differentially expressed immune genes (NBI-DEIGs), namely CCL8, SLC11A1, and PTGS2, were identified as regulators influencing treatment responses through macrophages.
NBI-based radiomics models introduce a novel and effective method for predicting radiosensitivity in NPC. The molecular mechanisms may involve the functional states of macrophages, as reflected by key regulatory genes.
本研究旨在评估窄带成像(NBI)内镜在利用放射组学预测鼻咽癌(NPC)放射敏感性方面的疗效,并探索相关分子机制。
本研究纳入57例经病理诊断并接受RNA测序的NPC患者。在接受根治性同步放化疗后,将他们分为完全缓解(CR)组和部分缓解(PR)组。我们使用ResNet50对267张NBI图像进行特征提取,每张图像获得2048个放射组学特征。使用Python进行深度学习,并使用最小绝对收缩和选择算子进行特征选择,我们鉴定了与放射组学特征相关的差异表达基因。随后,我们对这些基因进行了富集分析,并通过单细胞RNA测序验证了它们在肿瘤免疫微环境中的作用。
经过特征选择,获得了54个放射组学特征。由这些特征构建的机器学习算法显示,随机森林算法的平均准确率最高,为0.909,曲线下面积为0.961。相关性分析确定了30个与放射组学特征最密切相关的差异基因。富集和免疫浸润分析表明,肿瘤相关巨噬细胞与治疗反应密切相关。三个关键的NBI差异表达免疫基因(NBI-DEIGs),即CCL8、SLC11A1和PTGS2,被确定为通过巨噬细胞影响治疗反应的调节因子。
基于NBI的放射组学模型为预测NPC的放射敏感性引入了一种新颖有效的方法。分子机制可能涉及关键调节基因所反映的巨噬细胞功能状态。