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基于网络药理学和分子对接技术阐明丹参治疗急性胰腺炎的作用机制。

Elucidating the Mechanism of Action of Salvia miltiorrhiza for the Treatment of Acute Pancreatitis Based on Network Pharmacology and Molecular Docking Technology.

机构信息

Clinical College of Chongqing Medical University, Chongqing 401331, China.

College of Traditional Chinese Medicine, Chongqing Medical University, Chongqing 401331, China.

出版信息

Comput Math Methods Med. 2021 Nov 24;2021:8323661. doi: 10.1155/2021/8323661. eCollection 2021.

Abstract

Using network pharmacology and molecular docking, this study investigated the molecular mechanisms by which the active components in can alleviate acute pancreatitis. Initially, the active components of and the targets collected from the GeneCards database were screened based on the platform of systematic pharmacology analysis of traditional Chinese medicine. Subsequently, the active components were intersected with the disease targets. Also, interactions among the targets were computed using the STRING database. Biological function and pathway enrichment were analyzed using the Cluster Profiler package in the R software. Protein-protein interaction and component target pathway network were constructed using the Cytoscape software. Ultimately, the key targets and their corresponding components in the network were verified using the AutoDock Vina software. The results showed had 111 targets for acute pancreatitis. The biological process (BP) analysis showed that the active components of induced a drug response, positive regulation of transcription by RNA polymerase II promoter, signal transduction, positive regulation of cell proliferation, and negative regulation of apoptosis. Furthermore, the KEGG enrichment analysis screened 118 ( < 0.05) signaling pathways, such as the pathways related to cancer, neuroactive ligand-receptor interaction, PI3K-Akt signaling pathway, and cAMP signaling pathway, to name a few. Finally, molecular docking showed that the active components of had a good binding affinity with their corresponding target proteins. Through network pharmacology, this study predicted the potential pharmacodynamic material basis and the mechanisms by which can treat acute pancreatitis. Moreover, this study provided a scientific basis for mining the pharmacodynamic components of and expanding the scope of its clinical use.

摘要

本研究采用网络药理学和分子对接的方法,探讨了[中药名称]中活性成分缓解急性胰腺炎的分子机制。首先,基于中药系统药理学分析平台,筛选[中药名称]的活性成分和从 GeneCards 数据库收集的靶点。然后,将活性成分与疾病靶点进行交集。此外,使用 STRING 数据库计算靶点之间的相互作用。使用 R 软件中的 Cluster Profiler 包进行生物功能和通路富集分析。使用 Cytoscape 软件构建蛋白-蛋白相互作用和成分-靶点通路网络。最后,使用 AutoDock Vina 软件验证网络中的关键靶点及其相应的成分。结果表明,[中药名称]有 111 个靶点用于治疗急性胰腺炎。生物过程(BP)分析表明,[中药名称]的活性成分诱导药物反应、RNA 聚合酶 II 启动子的正调控转录、信号转导、细胞增殖的正调控和细胞凋亡的负调控。此外,KEGG 富集分析筛选出 118 个(<0.05)信号通路,如与癌症、神经活性配体-受体相互作用、PI3K-Akt 信号通路和 cAMP 信号通路等相关的通路。最后,分子对接表明,[中药名称]的活性成分与其相应的靶蛋白具有良好的结合亲和力。通过网络药理学,本研究预测了[中药名称]治疗急性胰腺炎的潜在药效物质基础和作用机制。此外,本研究为挖掘[中药名称]的药效成分和扩大其临床应用范围提供了科学依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7c55/8635895/50b25c6c816c/CMMM2021-8323661.001.jpg

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