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sp. nov.,一种从潮滩分离得到的海洋细菌,和 的再分类, , 和 ,分别为 , ,和 。

sp. nov., a marine bacterium isolated from a tidal flat and reclassification of , and comb. nov., comb. nov. and comb. nov.

机构信息

Division of Environmental Science & Ecological Engineering, College of Life Science & Biotechnology, Korea University, Seoul, Republic of Korea.

School of Earth and Environmental Science and Research Institute of Oceanography, Seoul National University, Seoul, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2021 Dec;71(12). doi: 10.1099/ijsem.0.005134.

Abstract

A yellow-coloured bacterium, designated strain JGD-16, was isolated from a tidal flat in Janggu-do, Garorim Bay, Taean-gun, Chungcheongbuk-do, Republic of Korea. Cells were Gram-stain-negative, aerobic, non-flagellated and short ovoid to coccoid-shaped. Growth was observed at 10-37 °C (optimum, 30 °C), pH 6.0-9.0 (pH 8.0) and with 1-5% (w/v) NaCl (2%). Results of 16S rRNA gene sequence analysis indicated that strain JGD-16 was closely related to LY02 (97.1 %), O30 (96.3 %), JPCCMB0017 (95.8 %), JCS350 (95.7 %) and BPTF-M16 (95.3%). Phylogenomic analysis using the maximum-likelihood algorithm showed that strain JGD-16 formed a clade with the genus . The genomic DNA G+C content was 57.8 mol%. The predominant respiratory quinone was ubiquinone-10. The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, a sphingoglycolipid, an unidentified glycolipid and an unidentified lipid. The major fatty acids were C 7 (31.5 %) and C 6 (19.6 %). On the basis of its phylogenomic, physiological and chemotaxonomical characteristics, strain JGD-16 represents a novel species within the genus , for which the name JGD-16sp. nov. is proposed. The type strain is JGD-16 (=KCTC 72632=KACC 21405=JCM 33750). We also propose the reclassification of as comb. nov., as comb. nov. and as comb. nov.

摘要

一株黄色细菌,命名为 JGD-16 菌株,从韩国忠清北道泰安郡牙山湾加罗林湾江居岛的潮滩中分离得到。细胞革兰氏染色阴性,需氧,无鞭毛,呈短卵圆形至球形。在 10-37°C(最佳温度为 30°C)、pH 值 6.0-9.0(pH 值 8.0)和 1-5%(w/v)NaCl(2%)的条件下可以生长。16S rRNA 基因序列分析结果表明,菌株 JGD-16 与 LY02(97.1%)、O30(96.3%)、JPCCMB0017(95.8%)、JCS350(95.7%)和 BPTF-M16(95.3%)最为相近。基于最大似然算法的系统发育基因组分析表明,菌株 JGD-16 与属形成一个分支。基因组 DNA G+C 含量为 57.8mol%。主要呼吸醌为泛醌-10。主要极性脂为双磷脂酰甘油、磷脂酰乙醇胺、磷脂酰甘油、磷脂酰胆碱、神经酰胺糖脂、一种未鉴定的糖脂和一种未鉴定的脂类。主要脂肪酸为 C7(31.5%)和 C6(19.6%)。基于其系统发育、生理和化学分类特征,菌株 JGD-16 代表属内的一个新种,因此命名为 JGD-16sp. nov.。模式菌株为 JGD-16(=KCTC 72632=KACC 21405=JCM 33750)。我们还提议将重新分类为 , 为 , 为 。

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