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新种,一种从池塘底部土壤中分离到的产铁载体细菌。

sp. nov., a siderophore-producing bacterium isolated from soil at the bottom of a pond.

机构信息

Department of Microbiology, School of Pharmacy, Aichi Gakuin University, Nagoya, Aichi, Japan.

Department of Oral Medical Science, School of Dentistry, Ohu University, Koriyama, Fukushima, Japan.

出版信息

Int J Syst Evol Microbiol. 2021 Dec;71(12). doi: 10.1099/ijsem.0.005135.

Abstract

Bacterial strain PAGU 2197, which was isolated from soil collected from the bottom of a pond in Japan, is characterized in this study. Cells of strain PAGU 2197 were aerobic, Gram-negative, short rod-shaped, non-motile, flexirubin-producing, oxidase-positive, catalase-positive and lecithinase-negative. A phylogenetic study based on 16S rRNA gene sequences and multilocus sequence analysis (, and ) indicated that strain PAGU 2197 belongs to the genus and is a member of an independent lineage including CCUG 60111 (sequence similarity, 95.9 %), CCUG 60566 (93.4 %) and CCUG 60103 (91.6 %). The average nucleotide identity values were 80.83-85.04 %. Because average nucleotide identity values of 95-96 % exceed the 70 % DNA-DNA hybridization cutoff value for species discrimination, strain PAGU 2197 represents a novel species in the genus . The genome of strain PAGU 2197 was 4 967 738 bp with a G+C content of 35.5 mol%. The sole respiratory quinone of strain PAGU 2197 was MK-6; the major cellular fatty acids were iso-C, iso-C 3OH, summed feature 3 (C 7 and/or C 6) and summed feature 9 (iso-C 9 and/or C 10-methyl); and the major polar lipids were phosphoglycolipids and phosphatidylethanolamine. These results indicate that strain PAGU 2197 should be classified as representing a novel species in the genus , for which the name sp. nov. is proposed, with strain PAGU 2197 (=NBRC 114264=CCUG 75150) as the type strain.

摘要

从日本池塘底部采集的土壤中分离得到一株细菌菌株 PAGU 2197,本研究对其进行了描述。菌株 PAGU 2197 的细胞为需氧、革兰氏阴性、短杆状、不运动、能产生腐臭素、氧化酶阳性、过氧化氢酶阳性、卵磷脂酶阴性。基于 16S rRNA 基因序列和多位点序列分析(,和)的系统发育研究表明,菌株 PAGU 2197 属于属,是一个包括 CCUG 60111(序列相似性,95.9%)、CCUG 60566(93.4%)和 CCUG 60103(91.6%)的独立谱系的成员。平均核苷酸同一性值为 80.83-85.04%。由于平均核苷酸同一性值为 95-96%超过了 70%DNA-DNA 杂交区分种的界限,因此菌株 PAGU 2197 代表属中的一个新种。菌株 PAGU 2197 的基因组大小为 4967738bp,G+C 含量为 35.5mol%。菌株 PAGU 2197 的唯一呼吸醌为 MK-6;主要的细胞脂肪酸为 iso-C、iso-C 3OH、总和特征 3(C7 和/或 C6)和总和特征 9(iso-C9 和/或 C10-甲基);主要的极性脂为磷脂酰甘油和磷脂酰乙醇胺。这些结果表明,菌株 PAGU 2197 应归类为属中的一个新种,建议将其命名为,模式菌株为 PAGU 2197(=NBRC 114264=CCUG 75150)。

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