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尾噬菌体科噬菌体的主要尾部蛋白。

Major tail proteins of bacteriophages of the order Caudovirales.

机构信息

Structural Bioinformatics Unit, Department of Structural Biology and Chemistry, C3BI, Institut Pasteur, CNRS UMR3528, CNRS USR3756, Paris, France.

Institute of Biological Information Processing (IBI-7: Structural Biochemistry), Forschungszentrum Jülich, Jülich, Germany; Physics Department, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.

出版信息

J Biol Chem. 2022 Jan;298(1):101472. doi: 10.1016/j.jbc.2021.101472. Epub 2021 Dec 8.

Abstract

Technological advances in cryo-EM in recent years have given rise to detailed atomic structures of bacteriophage tail tubes-a class of filamentous protein assemblies that could previously only be studied on the atomic scale in either their monomeric form or when packed within a crystal lattice. These hollow elongated protein structures, present in most bacteriophages of the order Caudovirales, connect the DNA-containing capsid with a receptor function at the distal end of the tail and consist of helical and polymerized major tail proteins. However, the resolution of cryo-EM data for these systems differs enormously between different tail tube types, partly inhibiting the building of high-fidelity models and barring a combination with further structural biology methods. Here, we review the structural biology efforts within this field and highlight the role of integrative structural biology approaches that have proved successful for some of these systems. Finally, we summarize the structural elements of major tail proteins and conceptualize how different amounts of tail tube flexibility confer heterogeneity within cryo-EM maps and, thus, limit high-resolution reconstructions.

摘要

近年来,冷冻电镜技术的进步使得噬菌体尾部管的详细原子结构得以呈现——这类丝状蛋白组装体以前只能在其单体形式或在晶格中包装时在原子尺度上进行研究。这些中空的细长蛋白结构存在于大多数尾丝目噬菌体中,将包含 DNA 的衣壳与尾部末端的受体功能连接起来,由螺旋和聚合的主要尾部蛋白组成。然而,不同尾部管类型的冷冻电镜数据的分辨率差异巨大,这在一定程度上阻碍了高保真模型的构建,并排除了与其他结构生物学方法的结合。在这里,我们回顾了该领域的结构生物学研究,并强调了整合结构生物学方法的作用,这些方法已被证明对其中一些系统是成功的。最后,我们总结了主要尾部蛋白的结构元件,并概念化了不同数量的尾部管灵活性如何在冷冻电镜图谱中赋予异质性,从而限制了高分辨率重构。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9113/8718954/510a0cd5892d/gr1.jpg

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