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基因调控转录组学与电子健康记录的整合突出了与肝表达增加相关的医疗结果模式。

The integration of genetically-regulated transcriptomics and electronic health records highlights a pattern of medical outcomes related to increased hepatic expression.

机构信息

Department of Psychiatry, Yale School of Medicine, West Haven, CT, USA.

VA CT Healthcare Center, West Haven, CT, USA.

出版信息

Amyloid. 2022 Jun;29(2):110-119. doi: 10.1080/13506129.2021.2018678. Epub 2021 Dec 22.

Abstract

Transthyretin (TTR) is the precursor of the fibrils that compromise organ function in hereditary and sporadic systemic amyloidoses (ATTR). RNA-interference and anti-sense therapeutics targeting hepatic transcription have been shown to reduce TTR amyloid formation. In the present study, we leveraged genetic and phenotypic information from the UK Biobank and transcriptomic profiles from the Genotype-Tissue Expression project to test the association of genetically regulated gene expression with 7149 traits assessed in 420,531 individuals. We conducted a multi-tissue analysis of transcription and identified an association with a operational procedure related to bone fracture ( = 5.46×10). Using tissue-specific expression information, we demonstrated that the association is driven by the genetic regulation of hepatic expression (odds ratio [OR] = 3.46,  = 9.51×10). Using the UK Biobank electronic health records (EHRs), we investigated the comorbidities affecting individuals undergoing this surgical procedure. Excluding bone fracture EHRs, we identified a pattern of health outcomes previously associated with ATTR manifestations. These included osteoarthritis (OR = 3.18,  = 9.18×10), carpal tunnel syndrome (OR = 2.15,  = .002), and a history of gastrointestinal diseases (OR = 2.01,  = 8.07×10). In conclusion, our study supports that hepatic expression can affect health outcomes linked to physiological and pathological processes presumably related to the encoded protein.

摘要

转甲状腺素蛋白(TTR)是遗传性和散发性系统性淀粉样变性(ATTR)中影响器官功能的纤维原的前体。已经证明,针对肝转录的 RNA 干扰和反义治疗可以减少 TTR 淀粉样形成。在本研究中,我们利用英国生物库的遗传和表型信息以及基因型-组织表达项目的转录组谱,测试了基因调控的基因表达与 420531 个人中评估的 7149 种特征之间的关联。我们进行了转录的多组织分析,并确定与与骨骨折相关的操作程序( = 5.46×10)相关的关联。使用组织特异性表达信息,我们证明该关联是由肝表达的遗传调控驱动的(优势比 [OR] = 3.46,  = 9.51×10)。使用英国生物库电子健康记录(EHR),我们研究了影响接受此手术程序的个体的合并症。排除骨骨折 EHR 后,我们确定了与 ATTR 表现相关的健康结果的模式。这些包括骨关节炎(OR = 3.18,  = 9.18×10)、腕管综合征(OR = 2.15,  = .002)和胃肠道疾病史(OR = 2.01,  = 8.07×10)。总之,我们的研究支持肝表达可以影响与生理和病理过程相关的健康结果,这些过程可能与编码蛋白有关。

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Thyroid Hormone Diseases and Osteoporosis.甲状腺激素疾病与骨质疏松症
J Clin Med. 2020 Apr 6;9(4):1034. doi: 10.3390/jcm9041034.

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