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甜瓜转录因子在果实发育调控中的全基因组鉴定与表征

Genome-Wide Identification and Characterization of Melon Transcription Factors in Regulation of Fruit Development.

作者信息

Tan Chao, Qiao Huilei, Ma Ming, Wang Xue, Tian Yunyun, Bai Selinge, Hasi Agula

机构信息

Key Laboratory of Herbage & Endemic Crop Biology, Ministry of Education, School of Life Sciences, Inner Mongolia University, Hohhot 010070, China.

Department of Plant Biology and Ecology, College of Life Sciences, Nankai University, Tianjin 300071, China.

出版信息

Plants (Basel). 2021 Dec 10;10(12):2721. doi: 10.3390/plants10122721.

Abstract

The () transcription factor family is one of the largest transcription factor families in plants and plays crucial roles in plant development. Melon is an important horticultural plant as well as an attractive model plant for studying fruit ripening. However, the gene family of melon has not yet been identified, and its functions in fruit growth and ripening are seldom researched. In this study, 118 genes were identified in the melon genome. These genes were unevenly distributed on chromosomes 1 to 12, and five were tandem repeat on chromosomes 4 and 8. There were 13 intron distribution patterns among the genes. Phylogenetic analysis illustrated that these CmbHLHs could be classified into 16 subfamilies. Expression patterns of the genes were studied using transcriptome data. Tissue specific expression of the gene was analysed by quantitative RT-PCR. The results showed that the gene was highly expressed in female flower and early developmental stage fruit. Transgenic melon lines overexpressing were generated, and overexpression of resulted in early fruit ripening compared to wild type. The transcription factor family was identified and analysed for the first time in melon, and overexpression of affected the ripening time of melon fruit. These findings laid a foundation for further study on the role of bHLH family members in the growth and development of melon.

摘要

()转录因子家族是植物中最大的转录因子家族之一,在植物发育中发挥着关键作用。甜瓜是一种重要的园艺植物,也是研究果实成熟的理想模式植物。然而,甜瓜的()基因家族尚未被鉴定,其在果实生长和成熟中的功能也鲜有研究。在本研究中,在甜瓜基因组中鉴定出118个()基因。这些()基因不均匀地分布在1号至12号染色体上,其中5个在4号和8号染色体上串联重复。()基因之间存在13种内含子分布模式。系统发育分析表明,这些甜瓜bHLH蛋白可分为16个亚家族。利用转录组数据研究了()基因的表达模式。通过定量RT-PCR分析了()基因的组织特异性表达。结果表明,()基因在雌花和果实发育早期高表达。构建了过表达()的转基因甜瓜株系,与野生型相比,()的过表达导致果实早熟。首次在甜瓜中鉴定并分析了()转录因子家族,()的过表达影响了甜瓜果实的成熟时间。这些发现为进一步研究bHLH家族成员在甜瓜生长发育中的作用奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c0c9/8709311/949ed6e107f8/plants-10-02721-g001.jpg

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