Marine College, Shandong University, Weihai, 264209, China.
Arch Microbiol. 2021 Dec 28;204(1):94. doi: 10.1007/s00203-021-02690-z.
A Gram-stain-negative, pink-pigmented, aerobic, non-motile and rod-shaped bacterium, designated as strain H15, was isolated from Acmaea sp., collected from Weihai, Shandong Province, China. The novel isolate was able to grow at 4-37 °C (optimum 33 °C), pH 5.5-9.0 (optimum 7.0) and with 0.0-7.0% NaCl (optimum 4%, w/v). Phylogenetic analysis based on 16S rRNA gene sequence comparisons revealed that the strain belonged to the family Rhodobacteraceae and was associated to the type strain of Pseudaestuariivita atlantica (96.7%). Genome analysis showed that the genome size was 3,893,398 bp and the DNA G + C content obtained from the draft genome sequence was 56.7%. The secondary metabolites predicated that the strain H15 contained one cluster of lasso peptide, one cluster of bacteriocin, two clusters of terpene production, two clusters of homoserine lactone and one cluster of beta lactone. The average amino acid identity, average nucleotide identity and digital DNA-DNA hybridization values between genome sequences of strain H15 and all the related strains compared were lower than 63.1, 72.0 and 19.7%, respectively. Based on the analysis of chemical components, the predominant cellular fatty acids were summed featured 8 (Cω7c/ω6c, 46.1%), C ω7c (17.1%), the major polar lipids contained phosphatidylcholine, phosphatidylglycerol, phosphatidylethanolamine and an unidentified lipid and the predominant menaquinone was Q10. Therefore, the combined chemotaxonomic, phenotypic and phylogenetic data indicated that the strain was considered to represent a novel species of the genus Pseudaestuariivita and the name Pseudaestuariivita rosea sp. nov. was proposed for strain H15 (MCCC 1K04420 = KCTC 82505).
一株革兰氏阴性、粉红色、需氧、非运动、杆状细菌,被命名为 H15 菌株,从中国山东威海收集的 Acmaea sp. 中分离得到。该新分离株能够在 4-37°C(最适 33°C)、pH5.5-9.0(最适 7.0)和 0.0-7.0%NaCl(最适 4%,w/v)的条件下生长。基于 16S rRNA 基因序列比较的系统发育分析表明,该菌株属于红杆菌科,与 Pseudaestuariivita atlantica 模式株(96.7%)密切相关。基因组分析表明,基因组大小为 3,893,398bp,从基因组草图序列中获得的 DNA G+C 含量为 56.7%。次生代谢产物预测,菌株 H15 含有一个套索肽簇、一个细菌素簇、两个萜烯产生簇、两个高丝氨酸内酯簇和一个β-内酰胺簇。与所有相关菌株的基因组序列相比,菌株 H15 的全基因组平均氨基酸同一性、全基因组平均核苷酸同一性和数字 DNA-DNA 杂交值分别低于 63.1%、72.0%和 19.7%。基于化学成分分析,主要的细胞脂肪酸为 summed featured 8 (Cω7c/ω6c, 46.1%)、C ω7c (17.1%),主要的极性脂含有磷脂酰胆碱、磷脂酰甘油、磷脂酰乙醇胺和一种未知脂质,主要的menaquinone 为 Q10。因此,综合化学分类、表型和系统发育数据表明,该菌株代表了 Pseudaestuariivita 属的一个新种,命名为 Pseudaestuariivita rosea sp. nov.,菌株 H15(MCCC 1K04420=KCTC 82505)。