National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA.
Department of Chemistry, Virginia Tech, Blacksburg, VA 24061, USA.
J Synchrotron Radiat. 2022 Jan 1;29(Pt 1):266-275. doi: 10.1107/S1600577521011978.
A transmission X-ray microscope (TXM) can investigate morphological and chemical information of a tens to hundred micrometre-thick specimen on a length scale of tens to hundreds of nanometres. It has broad applications in material sciences and battery research. TXM data processing is composed of multiple steps. A workflow software has been developed that integrates all the tools required for general TXM data processing and visualization. The software is written in Python and has a graphic user interface in Jupyter Notebook. Users have access to the intermediate analysis results within Jupyter Notebook and have options to insert extra data processing steps in addition to those that are integrated in the software. The software seamlessly integrates ImageJ as its primary image viewer, providing rich image visualization and processing routines. As a guide for users, several TXM specific data analysis issues and examples are also presented.
透射 X 射线显微镜（TXM）可用于研究数十至数百微米厚的样品的形貌和化学信息，其空间分辨率可达数十至数百纳米。它在材料科学和电池研究中有广泛的应用。TXM 数据处理由多个步骤组成。我们开发了一种工作流软件，它集成了所有通用 TXM 数据处理和可视化所需的工具。该软件是用 Python 编写的，在 Jupyter Notebook 中有图形用户界面。用户可以在 Jupyter Notebook 中访问中间分析结果，并可以选择插入除了软件中集成的那些之外的其他数据处理步骤。该软件无缝集成了 ImageJ 作为其主要的图像查看器，提供了丰富的图像可视化和处理例程。作为用户指南，我们还提供了几个 TXM 特定的数据分析问题和示例。
