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非生物胁迫下[具体植物名称未给出]中钾转运相关基因的全基因组鉴定与表达分析

Genome-Wide Identification and Expression Profiling of Potassium Transport-Related Genes in under Abiotic Stresses.

作者信息

Azeem Farrukh, Ijaz Usman, Ali Muhammad Amjad, Hussain Sabir, Zubair Muhammad, Manzoor Hamid, Abid Muhammad, Zameer Roshan, Kim Dong-Seon, Golokhvast Kirill S, Chung Gyuhwa, Sun Sangmi, Nawaz Muhammad Amjad

机构信息

Department of Bioinformatics and Biotechnology, GC University, Faisalabad 38000, Pakistan.

Department of Plant Pathology, University of Agriculture, Faisalabad 38000, Pakistan.

出版信息

Plants (Basel). 2021 Dec 21;11(1):2. doi: 10.3390/plants11010002.

Abstract

Potassium (K) is one of the most important cations that plays a significant role in plants and constitutes up to 10% of plants' dry weight. Plants exhibit complex systems of transporters and channels for the distribution of K from soil to numerous parts of plants. In this study, we have identified 39 genes encoding putative K transport-related genes in . Chromosomal mapping of these genes indicated an uneven distribution across eight out of 11 chromosomes. Comparative phylogenetic analysis of different plant species, i.e., , , , , and showed their strong conservation in different plant species. Evolutionary analysis of these genes suggests that gene duplication is a major route of expansion for this family in . Comprehensive promoter analysis identified several abiotic stresses related to cis-elements in the promoter regions of these genes, suggesting their role in abiotic stress tolerance. Our additional analyses indicated that abiotic stresses adversely affected the chlorophyll concentration, carotenoids, catalase, total soluble protein concentration, and the activities of superoxide and peroxidase in . It also disturbs the ionic balance by decreasing the uptake of K content and increasing the uptake of Na. Expression analysis from high-throughput sequencing data and quantitative real-time PCR experiments revealed that several K transport genes were expressed in different tissues (seed, flower, and pod) and in abiotic stress-responsive manners. A highly significant variation of expression was observed for (1.1 and 1.2), (1 and 2) , , , , , and (4, 5, and 8.1) in response to drought, heat or salinity stress. It reflected their potential roles in plant growth, development, or stress adaptations. The present study gives an in-depth understanding of K transport system genes in and will serve as a basis for a functional analysis of these genes.

摘要

钾(K)是最重要的阳离子之一,在植物中发挥着重要作用,占植物干重的10%。植物展现出复杂的转运体和通道系统,用于将钾从土壤分配到植物的许多部位。在本研究中,我们在[具体植物名称]中鉴定出39个编码假定钾转运相关基因的基因。这些基因的染色体定位表明它们在11条染色体中的8条上分布不均。对不同植物物种(即[列举的植物物种名称])的比较系统发育分析表明,它们在不同植物物种中具有很强的保守性。对这些基因的进化分析表明,基因复制是该家族在[具体植物名称]中扩张的主要途径。全面的启动子分析确定了这些基因启动子区域中与几个非生物胁迫相关的顺式元件,表明它们在非生物胁迫耐受性中的作用。我们的额外分析表明,非生物胁迫对[具体植物名称]中的叶绿素浓度、类胡萝卜素、过氧化氢酶、总可溶性蛋白浓度以及超氧化物和过氧化物酶的活性产生了不利影响。它还通过减少钾的吸收和增加钠的吸收来扰乱离子平衡。高通量测序数据和定量实时PCR实验的表达分析表明,几个钾转运基因在不同组织(种子、花和豆荚)中表达,并以非生物胁迫响应的方式表达。在干旱、高温或盐胁迫下,观察到[具体基因名称](1.1和1.2)、[具体基因名称](1和2)、[具体基因名称]、[具体基因名称]、[具体基因名称]、[具体基因名称]以及[具体基因名称](4、5和8.1)的表达存在高度显著差异。这反映了它们在植物生长、发育或胁迫适应中的潜在作用。本研究深入了解了[具体植物名称]中的钾转运系统基因,并将作为这些基因功能分析的基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cabe/8747342/1987218fd613/plants-11-00002-g001.jpg

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