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[物种名称]中钾转运相关基因的全基因组鉴定、基因组组织及特征分析及其在非生物胁迫中的作用

Genome-Wide Identification, Genomic Organization, and Characterization of Potassium Transport-Related Genes in and Their Role in Abiotic Stress.

作者信息

Siddique Muhammad Hussnain, Babar Naeem Iqbal, Zameer Roshan, Muzammil Saima, Nahid Nazia, Ijaz Usman, Masroor Ashir, Nadeem Majid, Rashid Muhammad Abdul Rehman, Hashem Abeer, Azeem Farrukh, Fathi Abd Allah Elsayed

机构信息

Department of Bioinformatics and Biotechnology, Government College University Faisalabad, Faisalabad 38000, Pakistan.

Department of Microbiology, Government College University Faisalabad, Faisalabad 38000, Pakistan.

出版信息

Plants (Basel). 2021 Oct 20;10(11):2238. doi: 10.3390/plants10112238.

Abstract

Potassium is the most important and abundant inorganic cation in plants and it can comprise up to 10% of a plant's dry weight. Plants possess complex systems of transporters and channels for the transport of K from soil to numerous parts of plants. is cultivated in different regions of the world as an economical source of carbohydrates, fiber, proteins, and fodder for animals. In the current study, 39 K transport genes were identified in , including 25 K transporters (17 carrier-like K transporters (KUP/HAK/KTs), 2 high-affinity potassium transporters (HKTs), and 6 K efflux transporters (KEAs) and 14 K channels (9 shakers and 5 tandem-pore K channels (TPKs). Chromosomal mapping indicated that these genes were randomly distributed among 10 chromosomes. A comparative phylogenetic analysis including protein sequences from and suggested vital conservation of K transport genes. Gene structure analysis showed that the intron/exon organization of K transporter and channel genes is highly conserved in a family-specific manner. In the promoter region, many -regulatory elements were identified related to abiotic stress, suggesting their role in abiotic stress response. Abiotic stresses (salt, heat, and drought) adversely affect chlorophyll, carotenoids contents, and total soluble proteins. Furthermore, the activities of catalase, superoxide, and peroxidase were altered in leaves under applied stresses. Expression analysis (RNA-seq data and quantitative real-time PCR) revealed that several K transport genes were expressed in abiotic stress-responsive manners. The present study provides an in-depth understanding of K transport system genes in and serves as a basis for further characterization of these genes.

摘要

钾是植物中最重要且含量最丰富的无机阳离子,其含量可达植物干重的10%。植物拥有复杂的转运体和通道系统,用于将钾从土壤运输到植物的各个部位。[植物名称]在世界不同地区种植,是碳水化合物、纤维、蛋白质和动物饲料的经济来源。在本研究中,在[植物名称]中鉴定出39个钾转运基因,包括25个钾转运体(17个类载体钾转运体(KUP/HAK/KTs)、2个高亲和性钾转运体(HKTs)和6个钾外流转运体(KEAs))以及14个钾通道(9个震荡器型和5个串联孔钾通道(TPKs))。染色体定位表明这些基因随机分布在10条染色体上。一项包括[植物名称]和[对比植物名称]蛋白质序列的比较系统发育分析表明钾转运基因具有重要的保守性。基因结构分析表明,钾转运体和通道基因的内含子/外显子组织以家族特异性方式高度保守。在启动子区域,鉴定出许多与非生物胁迫相关的调控元件,表明它们在非生物胁迫响应中的作用。非生物胁迫(盐、热和干旱)对叶绿素、类胡萝卜素含量和总可溶性蛋白产生不利影响。此外,在施加胁迫下,[植物名称]叶片中过氧化氢酶、超氧化物和过氧化物酶的活性发生了改变。表达分析(RNA测序数据和定量实时PCR)表明,几个钾转运基因以非生物胁迫响应方式表达。本研究深入了解了[植物名称]中的钾转运系统基因,并为进一步表征这些基因奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/20dc/8619154/0bda50233361/plants-10-02238-g001.jpg

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