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甘露糖结合分析及普那霉素的生物学应用

Mannose-binding analysis and biological application of pradimicins.

机构信息

Institute for Glyco-core Research (iGCORE), Nagoya University.

RIKEN Cluster for Pioneering Research.

出版信息

Proc Jpn Acad Ser B Phys Biol Sci. 2022;98(1):15-29. doi: 10.2183/pjab.98.002.

DOI:10.2183/pjab.98.002
PMID:35013028
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8795531/
Abstract

Pradimicins (PRMs) are an exceptional family of natural products that specifically bind d-mannose (Man). In the past decade, their scientific significance has increased greatly, with the emergence of biological roles of Man-containing glycans. However, research into the use of PRMs has been severely limited by their inherent tendency to form water-insoluble aggregates. Recently, we have established a derivatization strategy to suppress PRM aggregation, providing an opportunity for practical application of PRMs in glycobiological research. This article first outlines the challenges in studying Man-binding mechanisms and structural modifications of PRMs, and then describes our approach to address them. We also present our recent attempts toward the development of PRM-based research tools.

摘要

普拉地米辛(PRMs)是一类特殊的天然产物家族,它们专门与 d-甘露糖(Man)结合。在过去的十年中,随着含 Man 聚糖的生物学作用的出现,它们的科学意义大大增加。然而,PRMs 的使用研究受到其固有形成水不溶性聚集的倾向的严重限制。最近,我们建立了一种衍生化策略来抑制 PRM 聚集,为 PRMs 在糖生物学研究中的实际应用提供了机会。本文首先概述了研究 Man 结合机制和 PRMs 结构修饰的挑战,然后描述了我们解决这些挑战的方法。我们还介绍了我们最近在开发基于 PRM 的研究工具方面的尝试。

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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c92b/8795531/448d07d0d66a/pjab-98-015-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c92b/8795531/cca99423f38e/pjab-98-015-g009.jpg
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J Nat Prod. 2021 Sep 24;84(9):2496-2501. doi: 10.1021/acs.jnatprod.1c00506. Epub 2021 Sep 15.
2
Molecular Boronic Acid-Based Saccharide Sensors.基于硼酸的分子糖传感器
ACS Sens. 2021 Apr 23;6(4):1508-1528. doi: 10.1021/acssensors.1c00462. Epub 2021 Apr 12.
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Biomimetic carbohydrate recognition.仿生糖识别。
Chem Soc Rev. 2020 May 7;49(9):2531-2545. doi: 10.1039/c9cs00391f. Epub 2020 Mar 19.
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The mechanisms of boronate ester formation and fluorescent turn-on in ortho-aminomethylphenylboronic acids.邻氨甲基苯硼酸酯的形成和荧光开启的机制。
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Molecular Basis of Mannose Recognition by Pradimicins and their Application to Microbial Cell Surface Imaging.甘露糖识别的普拉地霉素分子基础及其在微生物细胞表面成像中的应用。
Cell Chem Biol. 2019 Jul 18;26(7):950-959.e8. doi: 10.1016/j.chembiol.2019.03.013. Epub 2019 Apr 25.
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Biomimetic Carbohydrate-Binding Agents (CBAs): Binding Affinities and Biological Activities.仿生碳水化合物结合剂(CBAs):结合亲和力和生物活性。
Chembiochem. 2019 Jun 3;20(11):1329-1346. doi: 10.1002/cbic.201800742. Epub 2019 Apr 2.
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Pradimicin-IRD from sp. IRD-009 and its antimicrobial and cytotoxic activities.来自 sp. IRD-009 的普拉地米星-IRD 及其抗微生物和细胞毒性活性。
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Analytical Application of Lectins.凝集素的分析应用。
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In-depth analyses of native N-linked glycans facilitated by high-performance anion exchange chromatography-pulsed amperometric detection coupled to mass spectrometry.通过高效阴离子交换色谱-脉冲安培检测与质谱联用对天然N-连接聚糖进行深入分析。
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Solid-State Nuclear Magnetic Resonance Analysis Reveals a Possible Calcium Binding Site of Pradimicin A.固态核磁共振分析揭示了普拉地霉素A可能的钙结合位点。
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