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BrainQuake: An Open-Source Python Toolbox for the Stereoelectroencephalography Spatiotemporal Analysis.

作者信息

Cai Fang, Wang Kang, Zhao Tong, Wang Haixiang, Zhou Wenjing, Hong Bo

机构信息

Department of Biomedical Engineering, School of Medicine, Tsinghua University, Beijing, China.

Epilepsy Center, Yuquan Hospital, Tsinghua University, Beijing, China.

出版信息

Front Neuroinform. 2022 Jan 7;15:773890. doi: 10.3389/fninf.2021.773890. eCollection 2021.


DOI:10.3389/fninf.2021.773890
PMID:35069168
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8782204/
Abstract

Intracranial stereoelectroencephalography (SEEG) is broadly used in the presurgical evaluation of intractable epilepsy, due to its high temporal resolution in neural activity recording and high spatial resolution within suspected epileptogenic zones. Neurosurgeons or technicians face the challenge of conducting a workflow of post-processing operations with the multimodal data (e.g., MRI, CT, and EEG) after the implantation surgery, such as brain surface reconstruction, electrode contact localization, and SEEG data analysis. Several software or toolboxes have been developed to take one or more steps in the workflow but without an end-to-end solution. In this study, we introduced BrainQuake, an open-source Python software for the SEEG spatiotemporal analysis, integrating modules and pipelines in surface reconstruction, electrode localization, seizure onset zone (SOZ) prediction based on ictal and interictal SEEG analysis, and final visualizations, each of which is highly automated with a user-friendly graphical user interface (GUI). BrainQuake also supports remote communications with a public server, which is facilitated with automated and standardized preprocessing pipelines, high-performance computing power, and data curation management to provide a time-saving and compatible platform for neurosurgeons and researchers.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/462c6af939b4/fninf-15-773890-g0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/dd6d53a24a07/fninf-15-773890-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/4dcf991c8df7/fninf-15-773890-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/3c37a65d3bca/fninf-15-773890-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/9a4299e62520/fninf-15-773890-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/9ac295556b6a/fninf-15-773890-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/45e5da343346/fninf-15-773890-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/54b66b067167/fninf-15-773890-g0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/8fd8cbac6955/fninf-15-773890-g0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/462c6af939b4/fninf-15-773890-g0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/dd6d53a24a07/fninf-15-773890-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/4dcf991c8df7/fninf-15-773890-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/3c37a65d3bca/fninf-15-773890-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/9a4299e62520/fninf-15-773890-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/9ac295556b6a/fninf-15-773890-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/45e5da343346/fninf-15-773890-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/54b66b067167/fninf-15-773890-g0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/8fd8cbac6955/fninf-15-773890-g0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f57/8782204/462c6af939b4/fninf-15-773890-g0009.jpg

相似文献

[1]
BrainQuake: An Open-Source Python Toolbox for the Stereoelectroencephalography Spatiotemporal Analysis.

Front Neuroinform. 2022-1-7

[2]
Indications, technique, and safety profile of insular stereoelectroencephalography electrode implantation in medically intractable epilepsy.

J Neurosurg. 2017-6-16

[3]
Intracranial EEG in the 21st Century.

Epilepsy Curr. 2020-7

[4]
Safety and efficacy of stereoelectroencephalography in pediatric focal epilepsy: a single-center experience.

J Neurosurg Pediatr. 2018-10

[5]
Stereoelectroencephalography (SEEG) and epilepsy surgery in posttraumatic epilepsy: A multicenter retrospective study.

Epilepsy Behav. 2020-11

[6]
Outcomes of stereoelectroencephalography exploration at an epilepsy surgery center.

Acta Neurol Scand. 2020-3-9

[7]
SEEG4D: a tool for 4D visualization of stereoelectroencephalography data.

Front Neuroinform. 2024-9-3

[8]
The stereotactic approach for mapping epileptic networks: a prospective study of 200 patients.

J Neurosurg. 2014-11

[9]
Source localization of ictal epileptic activity investigated by high resolution EEG and validated by SEEG.

Neuroimage. 2010-3-4

[10]
Presurgical intracranial investigations in epilepsy surgery.

Handb Clin Neurol. 2019

引用本文的文献

[1]
Mesial-to-lateral gradients of epileptiform activity to localize mesial temporal lobe epilepsy.

Epilepsia. 2025-5-19

[2]
SynchroLINNce: Toolbox for Neural Synchronization and Desynchronization Assessment in Epilepsy Animal Models.

Int J Psychol Res (Medellin). 2024-7-25

[3]
SEEG4D: a tool for 4D visualization of stereoelectroencephalography data.

Front Neuroinform. 2024-9-3

[4]
Previous, current, and future stereotactic EEG techniques for localising epileptic foci.

Expert Rev Med Devices. 2022-7

本文引用的文献

[1]
Noninvasive high-frequency oscillations riding spikes delineates epileptogenic sources.

Proc Natl Acad Sci U S A. 2021-4-27

[2]
Intracranial Electroencephalography Reveals Selective Responses to Cognitive Stimuli in the Periventricular Heterotopias.

J Neurosci. 2021-4-28

[3]
Trends in the use of automated algorithms for the detection of high-frequency oscillations associated with human epilepsy.

Epilepsia. 2020-8

[4]
FastSurfer - A fast and accurate deep learning based neuroimaging pipeline.

Neuroimage. 2020-10-1

[5]
Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0-2 years.

Neuroimage. 2020-9

[6]
Stereotactic radiofrequency thermocoagulation and resective surgery for patients with hypothalamic hamartoma.

J Neurosurg. 2021-3-1

[7]
SciPy 1.0: fundamental algorithms for scientific computing in Python.

Nat Methods. 2020-2-3

[8]
iEEGview: an open-source multifunction GUI-based Matlab toolbox for localization and visualization of human intracranial electrodes.

J Neural Eng. 2019-12-23

[9]
Are high-frequency oscillations better biomarkers of the epileptogenic zone than spikes?

Curr Opin Neurol. 2019-4

[10]
The Roles of Subdivisions of Human Insula in Emotion Perception and Auditory Processing.

Cereb Cortex. 2019-2-1

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