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利用公开数据在数据稀缺环境中构建和验证可转移的传染病风险指数:以菲律宾登革热为例的研究

Constructing and validating a transferable epidemic risk index in data scarce environments using open data: A case study for dengue in the Philippines.

机构信息

Institute of Global Health, Faculty of Medicine, University of Geneva, Geneva, Switzerland.

Institute for Environmental Sciences, University of Geneva, Geneva, Switzerland.

出版信息

PLoS Negl Trop Dis. 2022 Feb 4;16(2):e0009262. doi: 10.1371/journal.pntd.0009262. eCollection 2022 Feb.

Abstract

Epidemics are among the most costly and destructive natural hazards globally. To reduce the impacts of infectious disease outbreaks, the development of a risk index for infectious diseases can be effective, by shifting infectious disease control from emergency response to early detection and prevention. In this study, we introduce a methodology to construct and validate an epidemic risk index using only open data, with a specific focus on scalability. The external validation of our risk index makes use of distance sampling to correct for underreporting of infections, which is often a major source of biases, based on geographical accessibility to health facilities. We apply this methodology to assess the risk of dengue in the Philippines. The results show that the computed dengue risk correlates well with standard epidemiological metrics, i.e. dengue incidence (p = 0.002). Here, dengue risk constitutes of the two dimensions susceptibility and exposure. Susceptibility was particularly associated with dengue incidence (p = 0.048) and dengue case fatality rate (CFR) (p = 0.029). Exposure had lower correlations to dengue incidence (p = 0.193) and CFR (p = 0.162). Highest risk indices were seen in the south of the country, mainly among regions with relatively high susceptibility to dengue outbreaks. Our findings reflect that the modelled epidemic risk index is a strong indication of sub-national dengue disease patterns and has therefore proven suitability for disease risk assessments in the absence of timely epidemiological data. The presented methodology enables the construction of a practical, evidence-based tool to support public health and humanitarian decision-making processes with simple, understandable metrics. The index overcomes the main limitations of existing indices in terms of construction and actionability.

摘要

传染病是全球代价最高、破坏力最大的自然灾害之一。为了降低传染病爆发的影响,可以通过将传染病控制从应急响应转移到早期检测和预防,开发传染病风险指数来实现。在这项研究中,我们介绍了一种仅使用公开数据构建和验证传染病风险指数的方法,特别关注可扩展性。我们的风险指数的外部验证利用距离抽样来纠正感染漏报,这通常是偏见的主要来源,因为地理上接近卫生设施。我们应用这种方法来评估菲律宾登革热的风险。结果表明,计算出的登革热风险与标准流行病学指标(即登革热发病率)高度相关(p = 0.002)。这里,登革热风险由易感性和暴露两个维度构成。易感性与登革热发病率(p = 0.048)和登革热病死率(CFR)(p = 0.029)特别相关。暴露与登革热发病率(p = 0.193)和 CFR(p = 0.162)的相关性较低。该国南部的风险指数最高,主要集中在对登革热爆发相对易感的地区。我们的研究结果表明,所建传染病风险指数强烈表明了次国家级登革热疾病模式,因此在缺乏及时的流行病学数据的情况下,该指数已被证明适合疾病风险评估。所提出的方法能够构建一个实用的、基于证据的工具,用简单、易懂的指标来支持公共卫生和人道主义决策过程。该指数克服了现有指数在构建和可操作性方面的主要局限性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c71d/8849499/cac3de6a676f/pntd.0009262.g001.jpg

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