Centre for Research in Bioscience, Faculty of Health and Life Sciences, University of the West of England, Bristol, UK.
Emerging Pests and Pathogens Research Unit, Robert W. Holley Centre for Agriculture and Health, Agricultural Research Service, United States Department of Agriculture, Ithaca, New York, USA.
Int J Syst Evol Microbiol. 2022 Jan;72(1). doi: 10.1099/ijsem.0.005190.
Bacteria isolated from onion bulbs suffering from bacterial decay in the United States and Norway were previously shown to belong to the genus based on partial housekeeping gene sequences and/or fatty acid analysis. However, many strains could not be assigned to any existing species. Additionally, strains isolated from creek water and oak as well as a strain with bioremediation properties were assigned to based on partial housekeeping gene sequences. The taxonomic status of these 21 strains was investigated using multilocus sequence analysis, whole genome analyses, phenotypic assays and fatty acid analysis. Phylogenetic and phylogenomic analyses separated the strains into five clusters, one of which corresponded to . The remaining four clusters could be differentiated both genotypically and phenotypically from each other and existing species. Based on these results, we propose the description of four novel species: sp. nov. (type strain SL6=LMG 32257=DSM 112609), sp. nov. (H11b=LMG 32256=DSM 112610), sp. nov. (FC061912-K=LMG 32259=DSM 112611) and sp. nov. (FRB 231=LMG 32255=DSM 112612).
从美国和挪威遭受细菌性腐烂的洋葱鳞茎中分离出的细菌,先前基于部分管家基因序列和/或脂肪酸分析被归类为 属。然而,许多菌株无法被分配到任何现有的 种。此外,从溪流水中和橡木中分离出的菌株以及具有生物修复特性的菌株,根据部分管家基因序列被分配到 属。这些 21 株的分类地位通过多位点序列分析、全基因组分析、表型测定和脂肪酸分析进行了研究。系统发育和系统基因组分析将这些菌株分为五个聚类,其中一个聚类与 相对应。其余四个聚类在基因型和表型上都可以与彼此和现有的 种区分开来。基于这些结果,我们提出了描述四个新种的建议: sp. nov.(模式株 SL6=LMG 32257=DSM 112609)、 sp. nov.(H11b=LMG 32256=DSM 112610)、 sp. nov.(FC061912-K=LMG 32259=DSM 112611)和 sp. nov.(FRB 231=LMG 32255=DSM 112612)。