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新属Dryocola及两个新物种Dryocola boscaweniae sp. nov.和Dryocola clanedunensis sp. nov.的描述,这些物种从英国本土橡树的根际分离得到。

Description of Dryocola gen. nov. and two novel species, Dryocola boscaweniae sp. nov. and Dryocola clanedunensis sp. nov. isolated from the rhizosphere of native British oaks.

作者信息

Maddock Daniel, Brady Carrie, Denman Sandra, Arnold Dawn

机构信息

Centre for Research in Bioscience, College of Health, Science and Society, University of the West of England, Bristol, United Kingdom.

Centre for Research in Bioscience, College of Health, Science and Society, University of the West of England, Bristol, United Kingdom.

出版信息

Syst Appl Microbiol. 2023 Apr;46(2):126399. doi: 10.1016/j.syapm.2023.126399. Epub 2023 Jan 18.

Abstract

While investigating the role of the rhizosphere in the development of Acute Oak Decline, bacterial strains belonging to the family Enterobacteriaceae were isolated from rhizosphere soil following enrichment for the Enterobacterales. Partial sequencing of several housekeeping genes showed that these strains could not be assigned to an existing genus. Overall, 16 strains were investigated using a polyphasic approach to determine their taxonomic status. This involved phenotypic testing and fatty acid analysis paired with phylogenetic analyses of 16S rRNA and housekeeping gene sequences, as well as phylogenomic analysis of whole genome sequences. Phylogenomic and phylogenetic analyses consistently demonstrated that the 16 isolates could be separated into two distinct clusters in a monophyletic clade situated between the genera Cedecea and Buttiauxella. The two clusters could be genotypically and phenotypically differentiated from each other and from their closest neighbours. As such we propose the description of Dryocola boscaweniae gen. nov. sp. nov. (type strain H6W4 = CCUG 76177 = LMG 32610) and Dryocola clanedunesis sp. nov. (type strain H11S18 = CCUG 76181 = LMG 32611).

摘要

在研究根际在急性橡树衰退发展中的作用时,从富集肠杆菌目的根际土壤中分离出了属于肠杆菌科的细菌菌株。对几个管家基因进行的部分测序表明,这些菌株无法归入现有的属。总体而言,使用多相方法对16株菌株进行了研究,以确定它们的分类地位。这包括表型测试和脂肪酸分析,并与16S rRNA和管家基因序列的系统发育分析以及全基因组序列的系统基因组分析相结合。系统基因组和系统发育分析一致表明,这16株分离株可在位于西地西菌属和布蒂亚菌属之间的一个单系分支中分为两个不同的簇。这两个簇在基因型和表型上彼此以及与其最接近的邻居都有所不同。因此,我们提议描述新属博斯卡温干菌属(Dryocola boscaweniae gen. nov. sp. nov.)(模式菌株H6W4 = CCUG 76177 = LMG 32610)和新种克兰沙丘干菌(Dryocola clanedunesis sp. nov.)(模式菌株H11S18 = CCUG 76181 = LMG 32611)。

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