Brady Carrie, Kaur Sundeep, Crampton Bridget, Maddock Daniel, Arnold Dawn, Denman Sandra
Centre for Research in Bioscience, College of Health, Science and Society, University of the West of England, Bristol, United Kingdom.
Centre for Ecosystems, Society and Biosecurity, Forest Research, Farnham, United Kingdom.
Front Microbiol. 2022 Nov 17;13:1063107. doi: 10.3389/fmicb.2022.1063107. eCollection 2022.
Following a screening campaign of bleeding cankers of broadleaf hosts in Great Britain, numerous bacterial strains were isolated, identified by 16S rRNA and protein-coding gene sequencing and ultimately classified. During the course of the study, several Gram-negative, facultatively anaerobic strains were isolated from bleeding x (London plane) and x (common lime) cankers that could not be assigned to an existing species. Partial 16S rRNA gene sequencing placed these strains in the genus , as a close phylogenetic relative of . In an effort to determine the taxonomic position of the strains, a polyphasic approach was followed including genotypic, genomic, phenotypic, and chemotaxonomic assays. Multilocus sequence analysis based on four protein-coding genes (, , , and ) confirmed the phylogenetic position of the strains as a novel taxon of subgroup 3 of the genus , along with and , and furthermore, provided support for their reclassification in a novel genus. Whole genome comparisons allowed the delimitation of the novel species and also supported the proposed transfer of subgroup 3 species to a novel genus in the . Phenotypically the novel species could be differentiated from and , and the novel genus could be differentiated from the closely related genera and . Therefore, we propose (1) the reclassification of and in a novel genus, gen. nov., as comb. nov. and comb. nov., with comb. nov. as the type species (type strain A37 = CFBP 6631 = ATCC 700880 = CECT 5263), and (2) classification of the novel strains as sp. nov. (type strain BAC 15a-03b = LMG 32576 = NCPPB 4696).
在英国对阔叶寄主的出血性溃疡进行筛查之后,分离出了许多细菌菌株,通过16S rRNA和蛋白质编码基因测序对其进行鉴定并最终分类。在研究过程中,从出血性溃疡的悬铃木(伦敦悬铃木)和欧洲椴(欧洲小叶椴)中分离出了几株革兰氏阴性、兼性厌氧菌株,这些菌株无法归为现有物种。部分16S rRNA基因测序将这些菌株置于某属中,作为某属的一个近缘系统发育亲属。为了确定这些菌株的分类地位,采用了多相分类方法,包括基因型、基因组、表型和化学分类分析。基于四个蛋白质编码基因(某基因1、某基因2、某基因3和某基因4)的多位点序列分析证实了这些菌株作为某属亚群3的一个新分类单元的系统发育地位,与某菌株1和某菌株2一起,此外,还为它们在一个新属中的重新分类提供了支持。全基因组比较允许划定新物种,并也支持将亚群3物种转移到某科中的一个新属的提议。从表型上看,新物种可以与某菌株1和某菌株2区分开来,新属可以与密切相关的某属1和某属2区分开来。因此,我们提议:(1)将某菌株1和某菌株2重新分类到一个新属某新属中,分别为某新组合1和某新组合2,其中某新组合1作为模式种(模式菌株A37 = CFBP 6631 = ATCC 700880 = CECT 5263);(2)将新菌株分类为某新种(模式菌株BAC 15a - 03b = LMG 32576 = NCPPB 4696)。