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基于网络药理学预测生脉注射液急性治疗新型冠状病毒肺炎的分子机制

Prediction the Molecular Mechanism of Shengmai Injection in Acute Treatment of COVID-19 Based on Network Pharmacology.

作者信息

Wang Chen, Liu Ao-Lei, Wu He-Zhen, Yang Yan-Fang

机构信息

Hubei University of Chinese Medicine, Wuhan, 430065, China.

Key Laboratory of Traditional Chinese Medicine Resources and Chemistry of Hubei Province, Wuhan, 430065, China.

出版信息

Nat Prod Commun. 2022 Feb 2;17(2):1934578X221075075. doi: 10.1177/1934578X221075075. eCollection 2022 Feb.

Abstract

To predict the mechanism of Shengmai Injection (SMI) in the acute treatment of COVID-19 by network pharmacology and molecular docking. Search the compounds in the Traditional Chinese Medicine Systems Pharmacology (TCMSP), and screen them by Drug-like properties (DL) and Oral bioavailability (OB); Using PharmMapper database and GeneCards database to collect compounds targets and COVID-19 targets, and using UniProt database to standardize the names of target genes; Using DAVID database for KEGG pathway annotation and GO bioinformatics analysis; Using Cytoscape 3.8.2 software and STRING 10.5 database to construct "Component-Target-Pathway" network and Protein-Protein Interaction network (PPI); Using molecular docking to predict the binding ability of key compounds and key proteins. A total of 34 active components, 38 core targets and 180 signaling pathways were screened out. The results of molecular docking showed that Schisantherin A and Moupinamide have strong binding with EGFR and MAPK1. The key active compounds of SMI in the treatment of COVID-19 may be Schisantherin A and Moupinamide, and the molecular mechanism may be related to key targets such as EGFR and MAPK1, and may be involved in the PI3K-Akt signaling pathway and MAPK signaling pathway.

摘要

运用网络药理学和分子对接技术预测生脉注射液(SMI)在急性治疗新型冠状病毒肺炎(COVID-19)中的作用机制。在中国中药系统药理学数据库(TCMSP)中检索化合物,并通过类药性质(DL)和口服生物利用度(OB)进行筛选;利用中药系统药理学数据库与分析平台(PharmMapper)数据库和基因卡片(GeneCards)数据库收集化合物靶点和COVID-19靶点,并利用通用蛋白质数据库(UniProt)对靶基因名称进行标准化;利用DAVID数据库进行京都基因与基因组百科全书(KEGG)通路注释和基因本体(GO)生物信息学分析;利用Cytoscape 3.8.2软件和搜索工具检索相互作用基因/蛋白质的数据库(STRING)10.5数据库构建“成分-靶点-通路”网络和蛋白质-蛋白质相互作用(PPI)网络;利用分子对接预测关键化合物与关键蛋白的结合能力。共筛选出34种活性成分、38个核心靶点和180条信号通路。分子对接结果显示,五味子酯甲和穆坪酰胺与表皮生长因子受体(EGFR)和丝裂原活化蛋白激酶1(MAPK1)具有较强的结合能力。生脉注射液治疗COVID-19的关键活性化合物可能是五味子酯甲和穆坪酰胺,其分子机制可能与EGFR和MAPK1等关键靶点有关,可能涉及磷脂酰肌醇-3激酶/蛋白激酶B(PI3K-Akt)信号通路和MAPK信号通路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8642/8814618/4670c5063fe6/10.1177_1934578X221075075-fig1.jpg

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