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基于靶向 B-Raf 激酶的 Vieloplain F 的综合计算机探索:药理学特性、生物活性、分子对接和抗癌潜力。

A Comprehensive In Silico Exploration of Pharmacological Properties, Bioactivities, Molecular Docking, and Anticancer Potential of Vieloplain F from Targeting B-Raf Kinase.

机构信息

Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, School of Pharmacy, Shanghai Jiao Tong University, Shanghai 200240, China.

Department of Natural Product Chemistry, School of Pharmacy, Shanghai Jiao Tong University, Shanghai 200240, China.

出版信息

Molecules. 2022 Jan 28;27(3):917. doi: 10.3390/molecules27030917.

Abstract

Compounds derived from plants have several anticancer properties. In the current study, one guaiane-type sesquiterpene dimer, vieloplain F, isolated from species, was tested against B-Raf kinase protein (PDB: 3OG7), a potent target for melanoma. A comprehensive in silico analysis was conducted in this research to understand the pharmacological properties of a compound encompassing absorption, distribution, metabolism, excretion, and toxicity (ADMET), bioactivity score predictions, and molecular docking. During ADMET estimations, the FDA-approved medicine vemurafenib was hepatotoxic, cytochrome-inhibiting, and non-cardiotoxic compared to the vieloplain F. The bioactivity scores of vieloplain F were active for nuclear receptor ligand and enzyme inhibitor. During molecular docking experiments, the compound vieloplain F has displayed a higher binding potential with -11.8 kcal/mol energy than control vemurafenib -10.2 kcal/mol. It was shown that intermolecular interaction with the B-Raf complex and the enzyme's active gorge through hydrogen bonding and hydrophobic contacts was very accurate for the compound vieloplain F, which was then examined for MD simulations. In addition, simulations using MM-GBSA showed that vieloplain F had the greatest propensity to bind to active site residues. The vieloplain F has predominantly represented a more robust profile compared to control vemurafenib, and these results opened the road for vieloplain F for its utilization as a plausible anti-melanoma agent and anticancer drug in the next era.

摘要

植物源化合物具有多种抗癌特性。在本研究中,从 物种中分离得到的一种愈创木烷型倍半萜二聚体 Vieloplain F 被测试对 B-Raf 激酶蛋白(PDB:3OG7)的活性,B-Raf 激酶蛋白是黑色素瘤的一个有效靶点。在这项研究中进行了全面的计算机模拟分析,以了解包含吸收、分布、代谢、排泄和毒性(ADMET)、生物活性评分预测和分子对接的化合物的药理学特性。在 ADMET 估计中,与 Vieloplain F 相比,FDA 批准的药物vemurafenib 具有肝毒性、细胞色素抑制作用和非心脏毒性。Vieloplain F 的生物活性评分对核受体配体和酶抑制剂均为活性。在分子对接实验中,该化合物 Vieloplain F 与 -11.8 kcal/mol 的能量比对照 vemurafenib -10.2 kcal/mol 显示出更高的结合潜力。结果表明,化合物 Vieloplain F 与 B-Raf 复合物和酶的活性峡谷通过氢键和疏水接触的分子间相互作用非常准确,然后对其进行了 MD 模拟检查。此外,使用 MM-GBSA 的模拟表明,Vieloplain F 与活性位点残基结合的倾向最大。与对照 vemurafenib 相比,Vieloplain F 主要表现出更稳健的特性,这些结果为 Vieloplain F 作为一种合理的抗黑色素瘤剂和抗癌药物在下一代的应用开辟了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/affe/8839023/48ba482c80dd/molecules-27-00917-g001.jpg

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