Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI, 48201, USA.
Karmanos Cancer Institute, Wayne State University School of Medicine, 4100 John R, Detroit, MI, 48201, USA.
Sci Rep. 2022 Feb 16;12(1):2565. doi: 10.1038/s41598-021-04179-7.
Alpha/beta hydrolase domain-containing protein 5 (ABHD5) is a highly conserved protein that regulates various lipid metabolic pathways via interactions with members of the perilipin (PLIN) and Patatin-like phospholipase domain-containing protein (PNPLA) protein families. Loss of function mutations in ABHD5 result in Chanarin-Dorfman Syndrome (CDS), characterized by ectopic lipid accumulation in numerous cell types and severe ichthyosis. Recent data demonstrates that ABHD5 is the target of synthetic and endogenous ligands that might be therapeutic beneficial for treating metabolic diseases and cancers. However, the structural basis of ABHD5 functional activities, such as protein-protein interactions and ligand binding is presently unknown. To address this gap, we constructed theoretical structural models of ABHD5 by comparative modeling and topological shape analysis to assess the spatial patterns of ABHD5 conformations computed in protein dynamics. We identified functionally important residues on ABHD5 surface for lipolysis activation by PNPLA2, lipid droplet targeting and PLIN-binding. We validated the computational model by examining the effects of mutating key residues in ABHD5 on an array of functional assays. Our integrated computational and experimental findings provide new insights into the structural basis of the diverse functions of ABHD5 as well as pathological mutations that result in CDS.
α/β水解酶结构域蛋白 5(ABHD5)是一种高度保守的蛋白,通过与脂滴包被蛋白(PLIN)和 Patatin 样磷脂酶结构域蛋白(PNPLA)家族成员的相互作用,调节各种脂质代谢途径。ABHD5 中的功能丧失突变会导致 Chanarin-Dorfman 综合征(CDS),其特征是多种细胞类型中异位脂质积累和严重的鱼鳞癣。最近的数据表明,ABHD5 是合成和内源性配体的靶点,这些配体可能对治疗代谢性疾病和癌症具有治疗益处。然而,ABHD5 的功能活性的结构基础,如蛋白质-蛋白质相互作用和配体结合,目前尚不清楚。为了解决这一差距,我们通过比较建模和拓扑形状分析构建了 ABHD5 的理论结构模型,以评估在蛋白质动力学中计算的 ABHD5 构象的空间模式。我们确定了 ABHD5 表面上对 PNPLA2 介导的脂解激活、脂滴靶向和 PLIN 结合具有功能重要性的残基。我们通过检查 ABHD5 中关键残基突变对一系列功能测定的影响来验证计算模型。我们的综合计算和实验结果为 ABHD5 的多种功能以及导致 CDS 的病理突变的结构基础提供了新的见解。