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四个物种的完整线粒体基因组:物种复合体的分类学综述。

Complete mitogenomes of four species: A taxonomic review of the species complex.

作者信息

Yi Mu-Rong, Hsu Kui-Ching, Gu Sui, He Xiong-Bo, Luo Zhi-Sen, Lin Hung-Du, Yan Yun-Rong

机构信息

College of Fisheries, Guangdong Ocean University, Zhanjiang 524088, China.

Marine Resources Big Data Center of South China Sea, Southern Marine Science and Engineering Guangdong Laboratory, Zhanjiang 524088, China.

出版信息

Zookeys. 2022 Jan 26;1084:1-26. doi: 10.3897/zookeys.1084.71576. eCollection 2022.

Abstract

Four species, , , , and , from the coasts of the China Seas, have been identified and their entire mitochondrial genomes (mitogenomes) have been sequenced by next-generation sequencing technology. A comparative analysis of five mitogenomes was conducted, including the mitogenome of . The mitogenomes contained 16.568-16.840 bp and encoded 36 typical mitochondrial genes (13 protein-coding, 2 ribosomal RNA-coding, and 21 transfer RNA-coding genes) and two typical noncoding control regions. Although tRNA is absent from mitogenomes, when compared with the 22 tRNAs reported in other vertebrates, the gene arrangements in the mitogenomes of the studied species are consistent with those in most teleost mitogenomes. The full-length sequences and protein-coding genes (PCGs) in the mitogenomes of the five species had obvious AT biases and negative GC skew values. Our study indicate that the specimens in the Indian Ocean are neither nor but they are ; the species composition in the Indian Ocean is totally different from that in Pacific and Atlantic oceans; there are at least two species in Indian Ocean; and the worldwide systematics and diversity of the genus need to be reviewed.

摘要

已鉴定出四种来自中国海沿岸的物种,即[具体物种1]、[具体物种2]、[具体物种3]和[具体物种4],并通过下一代测序技术对它们的整个线粒体基因组(线粒体基因组)进行了测序。对五个线粒体基因组进行了比较分析,包括[具体物种5]的线粒体基因组。这些线粒体基因组包含16,568 - 16,840碱基对,编码36个典型的线粒体基因(13个蛋白质编码基因、2个核糖体RNA编码基因和21个转移RNA编码基因)以及两个典型的非编码控制区。尽管[具体物种]的线粒体基因组中缺少tRNA,但与其他脊椎动物中报道的22种tRNA相比,所研究物种的线粒体基因组中的基因排列与大多数硬骨鱼线粒体基因组中的排列一致。这五个物种的线粒体基因组中的全长序列和蛋白质编码基因(PCGs)具有明显的AT偏向和负的GC偏斜值。我们的研究表明,印度洋中的样本既不是[具体物种A]也不是[具体物种B],而是[具体物种C];印度洋中的[具体物种]组成与太平洋和大西洋中的完全不同;印度洋中至少有两种[具体物种];并且需要对该属的全球系统学和多样性进行重新审视。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6068/8810657/0dc77ccc521f/zookeys-1084-001-g001.jpg

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