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高温条件下分解木质纤维素植物凋落物的生物膜微生物群落中的嗜热菌和碳水化合物活性酶(CAZymes)。

Thermophiles and carbohydrate-active enzymes (CAZymes) in biofilm microbial consortia that decompose lignocellulosic plant litters at high temperatures.

机构信息

Faculty of Science, Universiti Teknologi Malaysia, 81310, Skudai, Johor, Malaysia.

School of Biological Sciences, Universiti Sains Malaysia, 11800, Gelugor, Pulau Pinang, Malaysia.

出版信息

Sci Rep. 2022 Feb 18;12(1):2850. doi: 10.1038/s41598-022-06943-9.

Abstract

The SKY hot spring is a unique site filled with a thick layer of plant litter. With the advancement of next-generation sequencing, it is now possible to mine many new biocatalyst sequences. In this study, we aimed to (i) identify the metataxonomic of prokaryotes and eukaryotes in microbial mats using 16S and 18S rRNA markers, (ii) and explore carbohydrate degrading enzymes (CAZymes) that have a high potential for future applications. Green microbial mat, predominantly photosynthetic bacteria, was attached to submerged or floating leaves litter. At the spring head, the sediment mixture consisted of plant debris, predominantly brownish-reddish gelatinous microbial mat, pale tan biofilm, and grey-white filament biofilm. The population in the spring head had a higher percentage of archaea and hyperthermophiles than the green mat. Concurrently, we cataloged nearly 10,000 sequences of CAZymes in both green and brown biofilms using the shotgun metagenomic sequencing approach. These sequences include β-glucosidase, cellulase, xylanase, α-N-arabinofuranosidase, α-L-arabinofuranosidase, and other CAZymes. In conclusion, this work elucidated that SKY is a unique hot spring due to its rich lignocellulosic material, often absent in other hot springs. The data collected from this study serves as a repository of new thermostable macromolecules, in particular families of glycoside hydrolases.

摘要

该 SKY 温泉是一个独特的地方,布满了厚厚的一层植物碎屑。随着下一代测序技术的进步,现在可以挖掘出许多新的生物催化剂序列。在这项研究中,我们旨在:(i) 使用 16S 和 18S rRNA 标记物识别微生物垫中的原核生物和真核生物的分类群;(ii) 探索具有未来应用潜力的碳水化合物降解酶 (CAZymes)。绿色微生物垫主要由光合细菌附着在浸没或漂浮的叶片碎屑上。在泉眼处,沉积物混合物由植物碎屑组成,主要是棕红色胶状微生物垫、淡棕色生物膜和灰色白色丝状生物膜。泉眼处的种群中,古菌和嗜热菌的比例高于绿色垫。同时,我们使用鸟枪法宏基因组测序方法对绿色和棕色生物膜中的近 10000 个 CAZymes 序列进行了编目。这些序列包括β-葡萄糖苷酶、纤维素酶、木聚糖酶、α-N-阿拉伯呋喃糖苷酶、α-L-阿拉伯呋喃糖苷酶和其他 CAZymes。总之,这项工作表明,由于富含木质纤维素物质,SKY 是一个独特的温泉,而其他温泉通常缺乏这种物质。本研究收集的数据为新的耐热大分子,特别是糖苷水解酶家族,提供了一个存储库。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd70/8857248/f8e250ee0dc0/41598_2022_6943_Fig1_HTML.jpg

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