• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

贝叶斯破译细菌化学感应中深度信息,超越愉悦/不悦反应。

Bayesian-based decipherment of in-depth information in bacterial chemical sensing beyond pleasant/unpleasant responses.

机构信息

Advanced ICT Research Institute, National Institute of Information and Communications Technology, Kobe, Hyogo, 651-2492, Japan.

Center for Information and Neural Networks (CiNet), National Institute of Information and Communications Technology and Osaka University, Kobe, Hyogo, 651-2492, Japan.

出版信息

Sci Rep. 2022 Feb 22;12(1):2965. doi: 10.1038/s41598-022-06732-4.

DOI:10.1038/s41598-022-06732-4
PMID:35194068
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8863824/
Abstract

Chemical sensing is vital to the survival of all organisms. Bacterial chemotaxis is conducted by multiple receptors that sense chemicals to regulate a single signalling system controlling the transition between the direction (clockwise vs. counterclockwise) of flagellar rotation. Such an integrated system seems better suited to judge chemicals as either favourable or unfavourable, but not for identification purposes though differences in their affinities to the receptors may cause difference in response strength. Here, an experimental setup was developed to monitor behaviours of multiple cells stimulated simultaneously as well as a statistical framework based on Bayesian inferences. Although responses of individual cells varied substantially, ensemble averaging of the time courses seemed characteristic to attractant species, indicating we can extract information of input chemical species from responses of the bacterium. Furthermore, two similar, but distinct, beverages elicited attractant responses of cells with profiles distinguishable with the Bayesian procedure. These results provide a basis for novel bio-inspired sensors that could be used with other cell types to sense wider ranges of chemicals.

摘要

化学感应对所有生物的生存都是至关重要的。细菌的趋化作用是由多个受体感知化学物质来调节单一的信号系统控制鞭毛旋转的方向(顺时针或逆时针)。这种集成系统似乎更适合判断化学物质是有利还是不利的,但不适用于识别目的,尽管它们与受体的亲和力差异可能导致响应强度的差异。在这里,开发了一种实验装置来同时监测多个细胞的刺激行为以及基于贝叶斯推断的统计框架。尽管单个细胞的反应差异很大,但时间过程的总体平均似乎是吸引剂物种的特征,这表明我们可以从细菌的反应中提取输入化学物质的信息。此外,两种类似但不同的饮料会引起细胞的吸引反应,细胞的反应特征可以通过贝叶斯程序来区分。这些结果为新型的仿生传感器提供了基础,这些传感器可以与其他细胞类型一起用于感知更广泛的化学物质。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/67e1/8863824/91c67ab7cc94/41598_2022_6732_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/67e1/8863824/f5bbb81d470c/41598_2022_6732_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/67e1/8863824/4658b089df99/41598_2022_6732_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/67e1/8863824/28b43f19dac2/41598_2022_6732_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/67e1/8863824/91c67ab7cc94/41598_2022_6732_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/67e1/8863824/f5bbb81d470c/41598_2022_6732_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/67e1/8863824/4658b089df99/41598_2022_6732_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/67e1/8863824/28b43f19dac2/41598_2022_6732_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/67e1/8863824/91c67ab7cc94/41598_2022_6732_Fig4_HTML.jpg

相似文献

1
Bayesian-based decipherment of in-depth information in bacterial chemical sensing beyond pleasant/unpleasant responses.贝叶斯破译细菌化学感应中深度信息,超越愉悦/不悦反应。
Sci Rep. 2022 Feb 22;12(1):2965. doi: 10.1038/s41598-022-06732-4.
2
Engineering Aspects of Olfaction嗅觉的工程学方面
3
Fumarate modulates bacterial flagellar rotation by lowering the free energy difference between the clockwise and counterclockwise states of the motor.富马酸盐通过降低马达顺时针和逆时针状态之间的自由能差来调节细菌鞭毛的旋转。
J Mol Biol. 1998 Jul 31;280(5):821-8. doi: 10.1006/jmbi.1998.1922.
4
Bacterial tactic responses.细菌趋化反应。
Adv Microb Physiol. 1999;41:229-89. doi: 10.1016/s0065-2911(08)60168-x.
5
Asymmetric random walks reveal that the chemotaxis network modulates flagellar rotational bias in .不对称随机游动表明趋化网络调节 中的鞭毛旋转偏向。
Elife. 2021 Jan 25;10:e63936. doi: 10.7554/eLife.63936.
6
Impulse responses in bacterial chemotaxis.细菌趋化作用中的脉冲响应。
Cell. 1982 Nov;31(1):215-26. doi: 10.1016/0092-8674(82)90421-4.
7
Singly Flagellated Pseudomonas aeruginosa Chemotaxes Efficiently by Unbiased Motor Regulation.单鞭毛铜绿假单胞菌通过无偏倚的运动调节进行高效趋化运动。
mBio. 2016 Apr 5;7(2):e00013. doi: 10.1128/mBio.00013-16.
8
Pausing, switching and speed fluctuation of the bacterial flagellar motor and their relation to motility and chemotaxis.细菌鞭毛马达的停顿、切换和速度波动及其与运动性和趋化性的关系。
J Mol Biol. 1990 Feb 5;211(3):551-63. doi: 10.1016/0022-2836(90)90265-N.
9
The dCache Chemoreceptor TlpA of Helicobacter pylori Binds Multiple Attractant and Antagonistic Ligands via Distinct Sites.幽门螺杆菌的 dCache 化学感受器 TlpA 通过不同的结合位点结合多种诱饵和拮抗配体。
mBio. 2021 Aug 31;12(4):e0181921. doi: 10.1128/mBio.01819-21. Epub 2021 Aug 3.
10
High hydrostatic pressure induces counterclockwise to clockwise reversals of the Escherichia coli flagellar motor.高静水压会导致大肠杆菌鞭毛马达逆时针到顺时针的反转。
J Bacteriol. 2013 Apr;195(8):1809-14. doi: 10.1128/JB.02139-12. Epub 2013 Feb 15.

本文引用的文献

1
Biphasic chemotaxis of to the microbiota metabolite indole.向微生物群代谢产物吲哚的双相趋化作用。
Proc Natl Acad Sci U S A. 2020 Mar 17;117(11):6114-6120. doi: 10.1073/pnas.1916974117. Epub 2020 Mar 2.
2
Stimulus sensing and signal processing in bacterial chemotaxis.细菌趋化性中的刺激感应和信号处理。
Curr Opin Microbiol. 2018 Oct;45:22-29. doi: 10.1016/j.mib.2018.02.002. Epub 2018 Feb 20.
3
Phenotypic diversity and temporal variability in a bacterial signaling network revealed by single-cell FRET.单细胞 FRET 揭示细菌信号网络中的表型多样性和时间可变性。
Elife. 2017 Dec 12;6:e27455. doi: 10.7554/eLife.27455.
4
Non-genetic diversity modulates population performance.非遗传多样性调节种群表现。
Mol Syst Biol. 2016 Dec 19;12(12):895. doi: 10.15252/msb.20167044.
5
A Machine Learning Framework for Gait Classification Using Inertial Sensors: Application to Elderly, Post-Stroke and Huntington's Disease Patients.一种使用惯性传感器进行步态分类的机器学习框架:应用于老年人、中风后患者和亨廷顿舞蹈症患者。
Sensors (Basel). 2016 Jan 21;16(1):134. doi: 10.3390/s16010134.
6
Bacterial chemotaxis: information processing, thermodynamics, and behavior.细菌趋化性:信息处理、热力学与行为
Curr Opin Microbiol. 2016 Apr;30:8-15. doi: 10.1016/j.mib.2015.12.001. Epub 2015 Dec 28.
7
Bacterial protein networks: properties and functions.细菌蛋白质网络:特性与功能。
Nat Rev Microbiol. 2015 Sep;13(9):559-72. doi: 10.1038/nrmicro3508. Epub 2015 Aug 10.
8
Relation between chemotaxis and consumption of amino acids in bacteria.细菌中趋化性与氨基酸消耗之间的关系。
Mol Microbiol. 2015 Jun;96(6):1272-82. doi: 10.1111/mmi.13006. Epub 2015 Apr 24.
9
Fundamental constraints on the abundances of chemotaxis proteins.趋化蛋白丰度的基本限制因素。
Biophys J. 2015 Mar 10;108(5):1293-305. doi: 10.1016/j.bpj.2015.01.024.
10
High-throughput prescreening of pharmaceuticals using a genome-wide bacterial bioreporter array.使用全基因组细菌生物报告器阵列进行高通量药物预筛选。
Biosens Bioelectron. 2015 Jun 15;68:699-704. doi: 10.1016/j.bios.2015.01.067. Epub 2015 Jan 30.