• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

冷冻电镜技术在 RNA 结构测定方面的进展。

Cryo-EM advances in RNA structure determination.

机构信息

The State Key Laboratory of Biotherapy, Department of Geriatrics and National Clinical Research Center for Geriatrics, West China Hospital, Sichuan University, Chengdu, Sichuan, 610044, China.

MOE Key Laboratory for Cellular Dynamics and Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230027, China.

出版信息

Signal Transduct Target Ther. 2022 Feb 23;7(1):58. doi: 10.1038/s41392-022-00916-0.

DOI:10.1038/s41392-022-00916-0
PMID:35197441
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8864457/
Abstract

Cryo-electron microscopy (cryo-EM) has emerged as an unprecedented tool to resolve protein structures at atomic resolution. Structural insights of biological samples not accessible by conventional X-ray crystallography and NMR can be explored with cryo-EM because measurements are carried out under near-native crystal-free conditions, and large protein complexes with conformational and compositional heterogeneity are readily resolved. RNA has remained underexplored in cryo-EM, despite its essential role in various biological processes. This review highlights current challenges and recent progress in using cryo-EM single-particle analysis to determine protein-free RNA structures, enabled by improvement in sample preparation and integration of multiple structural and biochemical methods.

摘要

低温电子显微镜(cryo-EM)的出现为解析蛋白质结构提供了前所未有的手段,达到原子分辨率。低温电子显微镜可以探索传统 X 射线晶体学和 NMR 无法获得的生物样本的结构信息,因为测量是在接近天然的无晶体条件下进行的,并且易于解析具有构象和组成异质性的大型蛋白质复合物。尽管 RNA 在各种生物过程中起着至关重要的作用,但在低温电子显微镜中,RNA 的研究仍不够充分。本文综述了利用低温电子显微镜单颗粒分析来确定无蛋白质 RNA 结构的当前挑战和最新进展,这得益于样品制备的改进和多种结构和生化方法的整合。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89c6/8866470/775918b77518/41392_2022_916_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89c6/8866470/7cb9162a8cb1/41392_2022_916_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89c6/8866470/80fdc49df2d7/41392_2022_916_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89c6/8866470/775918b77518/41392_2022_916_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89c6/8866470/7cb9162a8cb1/41392_2022_916_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89c6/8866470/80fdc49df2d7/41392_2022_916_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89c6/8866470/775918b77518/41392_2022_916_Fig3_HTML.jpg

相似文献

1
Cryo-EM advances in RNA structure determination.冷冻电镜技术在 RNA 结构测定方面的进展。
Signal Transduct Target Ther. 2022 Feb 23;7(1):58. doi: 10.1038/s41392-022-00916-0.
2
Sample preparation of biological macromolecular assemblies for the determination of high-resolution structures by cryo-electron microscopy.用于通过冷冻电子显微镜测定高分辨率结构的生物大分子组装体的样品制备。
Microscopy (Oxf). 2016 Feb;65(1):23-34. doi: 10.1093/jmicro/dfv367. Epub 2015 Dec 15.
3
How cryo-electron microscopy and X-ray crystallography complement each other.冷冻电子显微镜和X射线晶体学如何相互补充。
Protein Sci. 2017 Jan;26(1):32-39. doi: 10.1002/pro.3022. Epub 2016 Sep 7.
4
Rapid increase of near atomic resolution virus capsid structures determined by cryo-electron microscopy.通过冷冻电镜快速解析近原子分辨率的病毒衣壳结构。
J Struct Biol. 2018 Jan;201(1):1-4. doi: 10.1016/j.jsb.2017.10.007. Epub 2017 Oct 27.
5
Structure Determination by Single-Particle Cryo-Electron Microscopy: Only the Sky (and Intrinsic Disorder) is the Limit.利用单颗粒冷冻电子显微镜进行结构测定:只有天空(和固有无序)是极限。
Int J Mol Sci. 2019 Aug 27;20(17):4186. doi: 10.3390/ijms20174186.
6
Near-Atomic Resolution Cryo-EM Image Reconstruction of RNA.RNA 的近原子分辨率冷冻电镜图像重建。
Methods Mol Biol. 2023;2568:179-192. doi: 10.1007/978-1-0716-2687-0_12.
7
Cryo-EM: beyond the microscope.冷冻电镜:超越显微镜。
Curr Opin Struct Biol. 2017 Oct;46:71-78. doi: 10.1016/j.sbi.2017.06.002. Epub 2017 Jun 21.
8
X-rays in the Cryo-Electron Microscopy Era: Structural Biology's Dynamic Future.冷冻电子显微镜时代的X射线:结构生物学充满活力的未来
Biochemistry. 2018 Jan 23;57(3):277-285. doi: 10.1021/acs.biochem.7b01031. Epub 2018 Jan 11.
9
Native Mass Spectrometry-Based Screening for Optimal Sample Preparation in Single-Particle Cryo-EM.基于天然质谱的单颗粒冷冻电镜最佳样品制备筛选。
Structure. 2021 Feb 4;29(2):186-195.e6. doi: 10.1016/j.str.2020.11.001. Epub 2020 Nov 19.
10
Determining the Crystal Structure of TRPV6确定瞬时受体电位香草酸亚型6(TRPV6)的晶体结构

引用本文的文献

1
Discovery of RNA-Targeting Small Molecules: Challenges and Future Directions.RNA靶向小分子的发现:挑战与未来方向
MedComm (2020). 2025 Aug 24;6(9):e70342. doi: 10.1002/mco2.70342. eCollection 2025 Sep.
2
SEISMICgraph: a web-based tool for RNA structure data visualization.SEISMICgraph:一种用于RNA结构数据可视化的基于网络的工具。
Nucleic Acids Res. 2025 Jul 19;53(14). doi: 10.1093/nar/gkaf701.
3
Analysis of natural structures and chemical mapping data reveals local stability compensation in RNA.对天然结构和化学图谱数据的分析揭示了RNA中的局部稳定性补偿。

本文引用的文献

1
Sub-3-Å cryo-EM structure of RNA enabled by engineered homomeric self-assembly.通过工程同源自组装实现的亚 3-埃 cryo-EM 结构的 RNA。
Nat Methods. 2022 May;19(5):576-585. doi: 10.1038/s41592-022-01455-w. Epub 2022 May 2.
2
Imaging and visualizing SARS-CoV-2 in a new era for structural biology.结构生物学新时代下对严重急性呼吸综合征冠状病毒2(SARS-CoV-2)的成像与可视化
Interface Focus. 2021 Oct 12;11(6):20210019. doi: 10.1098/rsfs.2021.0019. eCollection 2021 Dec 6.
3
A viral RNA hijacks host machinery using dynamic conformational changes of a tRNA-like structure.
Nucleic Acids Res. 2025 Jun 20;53(12). doi: 10.1093/nar/gkaf565.
4
LncRNA-Protein Interactions: A Key to Deciphering LncRNA Mechanisms.长链非编码RNA-蛋白质相互作用:破解长链非编码RNA机制的关键
Biomolecules. 2025 Jun 17;15(6):881. doi: 10.3390/biom15060881.
5
Ensemble refinement of mismodeled cryo-EM RNA structures using all-atom simulations.使用全原子模拟对错误建模的冷冻电镜RNA结构进行系综优化。
Nat Commun. 2025 May 16;16(1):4549. doi: 10.1038/s41467-025-59769-0.
6
Determining the effects of pseudouridine incorporation on human tRNAs.确定假尿苷掺入对人tRNA的影响。
EMBO J. 2025 Apr 29. doi: 10.1038/s44318-025-00443-y.
7
: A platform for identification and analysis of ligand-binding pockets in RNA.用于识别和分析RNA中配体结合口袋的平台。
bioRxiv. 2025 Mar 29:2025.03.25.645323. doi: 10.1101/2025.03.25.645323.
8
The Unpaved Road of Non-Coding RNA Structure-Function Relationships: Current Knowledge, Available Methodologies, and Future Trends.非编码RNA结构-功能关系的未铺就之路:当前知识、可用方法及未来趋势
Noncoding RNA. 2025 Mar 2;11(2):20. doi: 10.3390/ncrna11020020.
9
Complex Water Networks Visualized through 2.2-2.3 Å Cryogenic Electron Microscopy of RNA.通过RNA的2.2 - 2.3埃低温电子显微镜观察可视化复杂水网络。
bioRxiv. 2025 Jan 24:2025.01.23.634578. doi: 10.1101/2025.01.23.634578.
10
Structural basis of circularly permuted group II intron self-splicing.环状排列的II类内含子自我剪接的结构基础
Nat Struct Mol Biol. 2025 Jan 31. doi: 10.1038/s41594-025-01484-x.
一种病毒 RNA 利用 tRNA 样结构的动态构象变化劫持宿主机制。
Science. 2021 Nov 19;374(6570):955-960. doi: 10.1126/science.abe8526. Epub 2021 Nov 18.
4
Computed structures of core eukaryotic protein complexes.核心真核蛋白复合物的计算结构。
Science. 2021 Dec 10;374(6573):eabm4805. doi: 10.1126/science.abm4805.
5
Geometric deep learning of RNA structure.RNA 结构的几何深度学习。
Science. 2021 Aug 27;373(6558):1047-1051. doi: 10.1126/science.abe5650.
6
Cryo-EM and antisense targeting of the 28-kDa frameshift stimulation element from the SARS-CoV-2 RNA genome.冷冻电镜和反义技术靶向 SARS-CoV-2 RNA 基因组的 28kDa 移码刺激元件。
Nat Struct Mol Biol. 2021 Sep;28(9):747-754. doi: 10.1038/s41594-021-00653-y. Epub 2021 Aug 23.
7
Cryo-EM structures of full-length Tetrahymena ribozyme at 3.1 Å resolution.全长四膜虫核酶的 3.1Å 分辨率冷冻电镜结构。
Nature. 2021 Aug;596(7873):603-607. doi: 10.1038/s41586-021-03803-w. Epub 2021 Aug 11.
8
Highly accurate protein structure prediction for the human proteome.高精准度的人类蛋白质组蛋白结构预测。
Nature. 2021 Aug;596(7873):590-596. doi: 10.1038/s41586-021-03828-1. Epub 2021 Jul 22.
9
Accurate prediction of protein structures and interactions using a three-track neural network.使用三轨神经网络准确预测蛋白质结构和相互作用。
Science. 2021 Aug 20;373(6557):871-876. doi: 10.1126/science.abj8754. Epub 2021 Jul 15.
10
Highly accurate protein structure prediction with AlphaFold.利用 AlphaFold 进行高精度蛋白质结构预测。
Nature. 2021 Aug;596(7873):583-589. doi: 10.1038/s41586-021-03819-2. Epub 2021 Jul 15.