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介导生物膜抑制剂的虚拟筛选、合成及生物评价。

Virtual Screening, Synthesis and Biological Evaluation of Mediated Biofilm Inhibitors.

机构信息

H. E. J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, Karachi 75270, Pakistan.

Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi 75270, Pakistan.

出版信息

Molecules. 2022 Feb 21;27(4):1455. doi: 10.3390/molecules27041455.

Abstract

Dental caries, a global oral health concern, is a biofilm-mediated disease. Streptococcus mutans, the most prevalent oral microbiota, produces extracellular enzymes, including glycosyltransferases responsible for sucrose polymerization. In bacterial communities, the biofilm matrix confers resistance to host immune responses and antibiotics. Thus, in cases of chronic dental caries, inhibiting bacterial biofilm assembly should prevent demineralization of tooth enamel, thereby preventing tooth decay. A high throughput screening was performed in the present study to identify small molecule inhibitors of glycosyltransferases. Multiple pharmacophore models were developed, validated with multiple datasets, and used for virtual screening against large chemical databases. Over 3000 drug-like hits were obtained that were analyzed to explore their binding mode. Finally, six compounds that showed good binding affinities were further analyzed for ADME (absorption, distribution, metabolism, and excretion) properties. The obtained in silico hits were evaluated for in vitro biofilm formation. The compounds displayed excellent antibiofilm activities with minimum inhibitory concentration (MIC) values of 15.26-250 µg/mL.

摘要

龋齿是一种全球性的口腔健康问题,是一种由生物膜介导的疾病。变形链球菌是最常见的口腔微生物群,可产生包括葡糖基转移酶在内的细胞外酶,该酶负责蔗糖的聚合。在细菌群落中,生物膜基质赋予了细菌对宿主免疫反应和抗生素的抵抗力。因此,在慢性龋齿的情况下,抑制细菌生物膜的组装应该可以防止牙釉质脱矿,从而预防龋齿。本研究进行了高通量筛选,以鉴定葡糖基转移酶的小分子抑制剂。开发了多个药效团模型,并使用多个数据集进行了验证,然后用于针对大型化学数据库进行虚拟筛选。获得了 3000 多个具有药物样特征的化合物,对其进行了分析以探索它们的结合模式。最后,对显示出良好结合亲和力的六种化合物进行了进一步的分析,以研究其吸收、分布、代谢和排泄(ADME)特性。通过体外生物膜形成实验对获得的计算命中物进行了评估。这些化合物表现出优异的抗生物膜活性,最小抑菌浓度(MIC)值为 15.26-250μg/ml。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2ed6/8876203/910e86aa9018/molecules-27-01455-g001.jpg

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