Sattar Sadia, Ullah Inam, Khanum Sofia, Bailie Marc, Shamsi Bushra, Ahmed Ibrar, Abbas Shah Tahir, Javed Sundus, Ghafoor Aamir, Pervaiz Amna, Sohail Fakiha, Imdad Kaleem, Tariq Aamira, Bostan Nazish, Ali Ijaz, Altermann Eric
Molecular Virology Labs, Department of Biosciences, Comsats University Islamabad, Islamabad 45550, Pakistan.
AgResearch, Palmerston North 4410, New Zealand.
Viruses. 2022 Jan 25;14(2):241. doi: 10.3390/v14020241.
Typhimurium, a foodborne pathogen, is a major concern for food safety. Its MDR serovars of animal origin pose a serious threat to the human population. Phage therapy can be an alternative for the treatment of such MDR serovars. In this study, we report on detailed genome analyses of a novel phage (-Phage-SSBI34) and evaluate its therapeutic potential. The phage was evaluated for latent time, burst size, host range, and bacterial growth reduction in liquid cultures. The phage stability was examined at various pH levels and temperatures. The genome analysis (141.095 Kb) indicated that its nucleotide sequence is novel, as it exhibited only 1-7% DNA coverage. The phage genome features 44% GC content, and 234 putative open reading frames were predicted. The genome was predicted to encode for 28 structural proteins and 40 enzymes related to nucleotide metabolism, DNA modification, and protein synthesis. Further, the genome features 11 tRNA genes for 10 different amino acids, indicating alternate codon usage, and hosts a unique hydrolase for bacterial lysis. This study provides new insights into the subfamily , of which SSBI34 may represent a new genus.
鼠伤寒沙门氏菌是一种食源性病原体,是食品安全的主要关注点。其动物源多重耐药血清型对人类构成严重威胁。噬菌体疗法可能是治疗此类多重耐药血清型的一种替代方法。在本研究中,我们报告了一种新型噬菌体(-噬菌体-SSBI34)的详细基因组分析,并评估了其治疗潜力。对该噬菌体的潜伏期、裂解量、宿主范围以及液体培养物中细菌生长的减少情况进行了评估。在不同的pH值和温度下检查了噬菌体的稳定性。基因组分析(141.095 Kb)表明其核苷酸序列是新颖的,因为它仅显示出1-7%的DNA覆盖率。噬菌体基因组的GC含量为44%,预测有234个推定的开放阅读框。该基因组预计编码28种结构蛋白和40种与核苷酸代谢、DNA修饰和蛋白质合成相关的酶。此外,该基因组具有针对10种不同氨基酸的11个tRNA基因,表明存在替代密码子使用情况,并且拥有一种用于细菌裂解的独特水解酶。本研究为该亚科提供了新的见解,其中SSBI34可能代表一个新属。