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溪边蝾螈的景观基因组学:面对环境变化对物种管理的启示。

Landscape genomics of the streamside salamander: Implications for species management in the face of environmental change.

作者信息

Beer Marc A, Kane Rachael A, Micheletti Steven J, Kozakiewicz Christopher P, Storfer Andrew

机构信息

School of Biological Sciences Washington State University Pullman Washington USA.

Department of Microbiology, Immunology, and Pathology Colorado State University Fort Collins Colorado USA.

出版信息

Evol Appl. 2022 Jan 25;15(2):220-236. doi: 10.1111/eva.13321. eCollection 2022 Feb.

Abstract

Understanding spatial patterns of genetic differentiation and local adaptation is critical in a period of rapid environmental change. Climate change and anthropogenic development have led to population declines and shifting geographic distributions in numerous species. The streamside salamander, , is an endemic amphibian with a small geographic range that predominantly inhabits small, ephemeral streams. As .  is listed as near-threatened by the IUCN, we describe range-wide patterns of genetic differentiation and adaptation to assess the species' potential to respond to environmental change. We use outlier scans and genetic-environment association analyses to identify genomic variation putatively underlying local adaptation across the species' geographic range. We find evidence for adaptation with a polygenic architecture and a set of candidate SNPs that identify genes putatively contributing to local adaptation. Our results build on earlier work that suggests that some populations are locally adapted despite evidence for asymmetric gene flow between the range core and periphery. Taken together, the body of work describing the evolutionary genetics of range limits in suggests that the species may be unlikely to respond naturally to environmental challenges through a range shift or adaptation. We suggest that management efforts such as assisted migration may be necessary in future.

摘要

在环境快速变化的时期,了解遗传分化和局部适应的空间模式至关重要。气候变化和人为发展已导致众多物种的种群数量下降和地理分布的变化。溪边蝾螈是一种特有两栖动物,地理分布范围较小,主要栖息在小型临时性溪流中。由于溪边蝾螈被国际自然保护联盟列为近危物种,我们描述了全范围的遗传分化和适应模式,以评估该物种应对环境变化的潜力。我们使用离群值扫描和遗传-环境关联分析来识别假定为该物种地理范围内局部适应基础的基因组变异。我们发现了具有多基因结构的适应证据以及一组识别假定有助于局部适应的基因的候选单核苷酸多态性(SNP)。我们的结果建立在早期工作的基础上,早期工作表明,尽管有证据表明在分布范围的核心和边缘之间存在不对称基因流,但一些溪边蝾螈种群仍具有局部适应性。综合来看,描述溪边蝾螈分布范围界限进化遗传学的一系列工作表明,该物种可能不太可能通过分布范围转移或局部适应来自然应对环境挑战。我们建议未来可能需要采取诸如辅助迁移等管理措施。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/596b/8867708/8e79aa22cfcd/EVA-15-220-g002.jpg

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